Variant report

Variant	rs71327047
Chromosome Location	chr3:46310840-46310841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10510750	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11575062	0.91[EUR][1000 genomes]
rs11919884	0.88[EUR][1000 genomes]
rs13065351	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13067058	0.84[AMR][1000 genomes]
rs13068145	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068271	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071469	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13073976	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13077302	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13078564	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13080757	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13093063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13096808	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13096905	0.91[AMR][1000 genomes]
rs13100243	0.98[EUR][1000 genomes]
rs17217831	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17283712	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17284138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17284187	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894387	0.91[EUR][1000 genomes]
rs1894388	0.91[EUR][1000 genomes]
rs28677778	0.98[EUR][1000 genomes]
rs3091310	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3092957	0.91[EUR][1000 genomes]
rs3092958	0.91[EUR][1000 genomes]
rs3092959	0.91[EUR][1000 genomes]
rs33998492	0.84[AMR][1000 genomes]
rs34024447	0.91[EUR][1000 genomes]
rs34041956	0.91[EUR][1000 genomes]
rs34073838	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34079287	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34106161	0.91[EUR][1000 genomes]
rs34180919	0.95[EUR][1000 genomes]
rs34272024	0.85[EUR][1000 genomes]
rs34351442	0.95[EUR][1000 genomes]
rs34363105	0.91[EUR][1000 genomes]
rs34406035	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34448949	0.91[EUR][1000 genomes]
rs34473395	0.91[EUR][1000 genomes]
rs34578126	0.93[EUR][1000 genomes]
rs34692251	0.84[AMR][1000 genomes]
rs34709208	0.91[EUR][1000 genomes]
rs34988015	0.95[EUR][1000 genomes]
rs35035328	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35117954	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35148665	0.95[EUR][1000 genomes]
rs35203745	0.98[EUR][1000 genomes]
rs35218998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35367413	0.91[EUR][1000 genomes]
rs35373513	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35413141	0.91[EUR][1000 genomes]
rs35438577	0.91[EUR][1000 genomes]
rs35511592	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35513549	0.86[EUR][1000 genomes]
rs35577626	0.95[EUR][1000 genomes]
rs35601704	0.91[EUR][1000 genomes]
rs35646896	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35943069	0.88[EUR][1000 genomes]
rs36048333	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36052732	0.91[EUR][1000 genomes]
rs36078103	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3749461	0.91[EUR][1000 genomes]
rs3918354	0.91[EUR][1000 genomes]
rs3918362	0.91[EUR][1000 genomes]
rs3918365	0.91[EUR][1000 genomes]
rs3918368	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4473594	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4987053	0.91[EUR][1000 genomes]
rs6793370	0.98[EUR][1000 genomes]
rs6803341	0.81[EUR][1000 genomes]
rs71327048	0.95[EUR][1000 genomes]
rs71327052	0.88[EUR][1000 genomes]
rs71327053	0.90[EUR][1000 genomes]
rs71327054	0.91[EUR][1000 genomes]
rs71327055	0.91[EUR][1000 genomes]
rs71327056	0.91[EUR][1000 genomes]
rs71327057	0.91[EUR][1000 genomes]
rs71615445	0.91[EUR][1000 genomes]
rs71622511	0.91[EUR][1000 genomes]
rs7649905	0.98[EUR][1000 genomes]
rs9810242	0.98[EUR][1000 genomes]
rs9872023	1.00[EUR][1000 genomes]
rs9882616	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46303400-46315200	Weak transcription	Gastric	stomach
2	chr3:46310600-46311800	Enhancers	GM12878-XiMat	blood
3	chr3:46310600-46312600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46310600-46312600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:46310800-46312000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:46310800-46312000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:46310800-46312200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:46310800-46312400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:46310800-46312400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:46310800-46312600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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