Variant report

Variant	rs34059564
Chromosome Location	chr3:46226165-46226166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46224495..46227137-chr3:46235369..46237758,2	K562	blood:
2	chr3:46224582..46227579-chr3:46229207..46231436,3	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10510748	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510749	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929489	0.93[EUR][1000 genomes]
rs13059906	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13062450	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13062523	0.93[EUR][1000 genomes]
rs13068572	0.85[ASN][1000 genomes]
rs13069467	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069750	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069845	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13070099	0.93[EUR][1000 genomes]
rs13075270	0.95[EUR][1000 genomes]
rs13075836	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13080979	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082995	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083881	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13083914	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084057	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084175	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086063	0.83[ASN][1000 genomes]
rs13088766	0.93[EUR][1000 genomes]
rs13089544	0.86[ASN][1000 genomes]
rs13089907	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13090848	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13092160	0.91[EUR][1000 genomes]
rs13095940	0.92[EUR][1000 genomes]
rs13095946	0.91[EUR][1000 genomes]
rs13096307	0.92[EUR][1000 genomes]
rs13096325	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096371	0.92[EUR][1000 genomes]
rs13096873	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13097340	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097666	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098911	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17078681	0.88[AFR][1000 genomes]
rs17078704	0.87[ASN][1000 genomes]
rs17216717	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17282797	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17282922	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2201148	0.80[AFR][1000 genomes]
rs3091314	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3136672	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3136673	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3176824	0.88[EUR][1000 genomes]
rs3176825	0.93[EUR][1000 genomes]
rs3176826	0.93[EUR][1000 genomes]
rs3181076	0.93[EUR][1000 genomes]
rs3181078	0.93[EUR][1000 genomes]
rs3181080	0.93[EUR][1000 genomes]
rs34013035	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34047458	0.91[EUR][1000 genomes]
rs34101673	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34134191	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198655	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34280313	0.93[EUR][1000 genomes]
rs34340501	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376347	0.91[EUR][1000 genomes]
rs34378541	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34401473	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423195	0.93[EUR][1000 genomes]
rs34498313	0.93[EUR][1000 genomes]
rs34523728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34531115	0.91[EUR][1000 genomes]
rs34567015	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34570200	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611049	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625088	0.91[EUR][1000 genomes]
rs34693386	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759782	0.93[EUR][1000 genomes]
rs34865316	0.92[EUR][1000 genomes]
rs34870159	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34897745	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919616	0.93[EUR][1000 genomes]
rs34920132	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34985947	0.93[EUR][1000 genomes]
rs34996127	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111399	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35178150	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35195804	0.93[EUR][1000 genomes]
rs35288652	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35335084	0.91[EUR][1000 genomes]
rs35354367	0.93[EUR][1000 genomes]
rs35429781	0.91[EUR][1000 genomes]
rs35434266	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35560301	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35566550	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35587265	0.91[EUR][1000 genomes]
rs35614049	0.91[EUR][1000 genomes]
rs35617677	0.91[EUR][1000 genomes]
rs35685805	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35754688	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35775079	0.91[EUR][1000 genomes]
rs35853141	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35919278	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35942803	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35960950	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35984988	0.93[EUR][1000 genomes]
rs36010446	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36189995	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774630	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41364446	0.87[AFR][1000 genomes]
rs41432345	0.97[EUR][1000 genomes]
rs41537946	0.93[EUR][1000 genomes]
rs4443214	0.93[ASN][1000 genomes]
rs4493469	1.00[ASN][1000 genomes]
rs4547740	0.88[AFR][1000 genomes]
rs56102061	0.88[AFR][1000 genomes]
rs57115330	0.92[EUR][1000 genomes]
rs57522944	0.88[AFR][1000 genomes]
rs59654809	0.86[AFR][1000 genomes]
rs61145486	0.85[AFR][1000 genomes]
rs6765904	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796282	0.80[AFR][1000 genomes]
rs71327035	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327036	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327038	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327039	0.91[EUR][1000 genomes]
rs7631551	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46223600-46231400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46224800-46226400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:46224800-46226600	Enhancers	NHEK	skin
4	chr3:46225000-46226600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:46225000-46227000	Enhancers	NHDF-Ad	bronchial
6	chr3:46225000-46228200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:46225200-46226400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:46225200-46228400	Weak transcription	Fetal Thymus	thymus
9	chr3:46225200-46228800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:46225400-46227800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:46225400-46228000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:46225600-46226400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:46225600-46226400	Enhancers	HSMM	muscle
14	chr3:46225600-46227000	Enhancers	HSMMtube	muscle
15	chr3:46225600-46227200	Weak transcription	Primary B cells from cord blood	blood
16	chr3:46225600-46227800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:46225800-46226200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:46225800-46226600	Enhancers	NHLF	lung
19	chr3:46225800-46229200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:46226000-46226200	Weak transcription	HMEC	breast

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