Variant report

Variant	rs4493469
Chromosome Location	chr3:46177992-46177993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46169290..46171223-chr3:46177395..46178997,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10510748	1.00[ASN][1000 genomes]
rs10510749	1.00[ASN][1000 genomes]
rs13059906	0.97[ASN][1000 genomes]
rs13061548	0.97[ASN][1000 genomes]
rs13062450	0.97[ASN][1000 genomes]
rs13068572	0.85[ASN][1000 genomes]
rs13069467	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069750	1.00[ASN][1000 genomes]
rs13069845	0.97[ASN][1000 genomes]
rs13075836	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13080979	0.97[ASN][1000 genomes]
rs13082995	0.93[ASN][1000 genomes]
rs13083881	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13083914	0.97[ASN][1000 genomes]
rs13084057	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084175	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086063	0.83[ASN][1000 genomes]
rs13089544	0.86[ASN][1000 genomes]
rs13089907	0.97[ASN][1000 genomes]
rs13090848	0.97[ASN][1000 genomes]
rs13096325	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096873	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13097340	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097666	0.94[ASN][1000 genomes]
rs13098911	0.97[ASN][1000 genomes]
rs17078704	0.87[ASN][1000 genomes]
rs17216717	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17282797	0.97[ASN][1000 genomes]
rs17282922	0.97[ASN][1000 genomes]
rs3091314	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3136672	0.93[ASN][1000 genomes]
rs3136673	0.93[ASN][1000 genomes]
rs34013035	1.00[ASN][1000 genomes]
rs34059564	1.00[ASN][1000 genomes]
rs34101673	1.00[ASN][1000 genomes]
rs34134191	1.00[ASN][1000 genomes]
rs34198655	0.97[ASN][1000 genomes]
rs34340501	1.00[ASN][1000 genomes]
rs34378541	0.97[ASN][1000 genomes]
rs34401473	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409248	1.00[ASN][1000 genomes]
rs34523728	1.00[ASN][1000 genomes]
rs34558763	0.86[AMR][1000 genomes]
rs34567015	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34570200	1.00[ASN][1000 genomes]
rs34611049	0.93[ASN][1000 genomes]
rs34693386	1.00[ASN][1000 genomes]
rs34870159	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34897745	1.00[ASN][1000 genomes]
rs34920132	0.97[ASN][1000 genomes]
rs34996127	1.00[ASN][1000 genomes]
rs35111399	0.93[ASN][1000 genomes]
rs35178150	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35288652	0.97[ASN][1000 genomes]
rs35434266	0.97[ASN][1000 genomes]
rs35560301	1.00[ASN][1000 genomes]
rs35566550	0.97[ASN][1000 genomes]
rs35685805	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35754688	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35853141	1.00[ASN][1000 genomes]
rs35919278	0.97[ASN][1000 genomes]
rs35942803	0.97[ASN][1000 genomes]
rs35960950	0.94[ASN][1000 genomes]
rs36010446	0.97[ASN][1000 genomes]
rs36189995	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774630	0.93[ASN][1000 genomes]
rs4443214	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6765904	1.00[ASN][1000 genomes]
rs71327035	1.00[ASN][1000 genomes]
rs71327036	1.00[ASN][1000 genomes]
rs71327038	1.00[ASN][1000 genomes]
rs7631551	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
3	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:46174200-46183400	Weak transcription	Primary B cells from cord blood	blood
5	chr3:46174400-46183200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:46177000-46182400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:46177400-46178400	Enhancers	Monocytes-CD14+_RO01746	blood

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