Variant report

Variant	rs35960950
Chromosome Location	chr3:46199680-46199681
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10510748	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10510749	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11929489	0.86[EUR][1000 genomes]
rs13059906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13061548	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13062450	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13062523	0.86[EUR][1000 genomes]
rs13069467	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13069750	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13069845	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13070099	0.91[EUR][1000 genomes]
rs13075270	0.87[EUR][1000 genomes]
rs13075836	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13080979	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13082995	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13083881	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13083914	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13084057	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13084175	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13086063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13088766	0.86[EUR][1000 genomes]
rs13089544	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13089907	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13090848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13092160	0.88[EUR][1000 genomes]
rs13095940	0.89[EUR][1000 genomes]
rs13095946	0.88[EUR][1000 genomes]
rs13096307	0.89[EUR][1000 genomes]
rs13096325	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13096371	0.89[EUR][1000 genomes]
rs13096873	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13097340	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13097666	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13098911	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17078681	0.92[AFR][1000 genomes]
rs17078704	0.81[ASN][1000 genomes]
rs17216717	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17282797	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17282922	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2201148	0.91[AFR][1000 genomes]
rs3091314	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3136672	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3136673	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3176824	0.86[EUR][1000 genomes]
rs3176825	0.91[EUR][1000 genomes]
rs3176826	0.91[EUR][1000 genomes]
rs3181076	0.91[EUR][1000 genomes]
rs3181078	0.91[EUR][1000 genomes]
rs3181080	0.91[EUR][1000 genomes]
rs34013035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34047458	0.88[EUR][1000 genomes]
rs34059564	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34101673	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34134191	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34198655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34280313	0.91[EUR][1000 genomes]
rs34340501	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34376347	0.83[EUR][1000 genomes]
rs34378541	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34401473	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34409248	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34423195	0.91[EUR][1000 genomes]
rs34498313	0.86[EUR][1000 genomes]
rs34523728	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34531115	0.88[EUR][1000 genomes]
rs34558763	0.87[EUR][1000 genomes]
rs34567015	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34570200	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34611049	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34625088	0.88[EUR][1000 genomes]
rs34693386	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34759782	0.86[EUR][1000 genomes]
rs34865316	0.89[EUR][1000 genomes]
rs34870159	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34897745	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34919616	0.91[EUR][1000 genomes]
rs34920132	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34985947	0.86[EUR][1000 genomes]
rs34996127	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35111399	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35178150	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35195804	0.86[EUR][1000 genomes]
rs35288652	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35335084	0.88[EUR][1000 genomes]
rs35354367	0.91[EUR][1000 genomes]
rs35429781	0.88[EUR][1000 genomes]
rs35434266	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35560301	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35566550	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35587265	0.88[EUR][1000 genomes]
rs35614049	0.88[EUR][1000 genomes]
rs35617677	0.88[EUR][1000 genomes]
rs35685805	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35754688	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35775079	0.88[EUR][1000 genomes]
rs35853141	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35919278	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35942803	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35984988	0.86[EUR][1000 genomes]
rs36010446	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36189995	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774630	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41364446	0.91[AFR][1000 genomes]
rs41432345	0.89[EUR][1000 genomes]
rs41537946	0.86[EUR][1000 genomes]
rs4443214	0.87[ASN][1000 genomes]
rs4493469	0.94[ASN][1000 genomes]
rs4547740	0.92[AFR][1000 genomes]
rs56102061	0.92[AFR][1000 genomes]
rs57115330	0.84[EUR][1000 genomes]
rs57522944	0.92[AFR][1000 genomes]
rs59654809	0.90[AFR][1000 genomes]
rs61145486	0.96[AFR][1000 genomes]
rs6765904	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6796282	0.91[AFR][1000 genomes]
rs71327035	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71327036	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71327038	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71327039	0.88[EUR][1000 genomes]
rs7631551	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links