Variant report

Variant	rs17078704
Chromosome Location	chr3:46242874-46242875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46228969..46230539-chr3:46241094..46242941,2	MCF-7	breast:
2	chr3:46242531..46244471-chr3:46245460..46247325,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10510748	0.87[ASN][1000 genomes]
rs10510749	0.87[ASN][1000 genomes]
rs10510750	0.85[CHB][hapmap]
rs11919943	0.85[CHB][hapmap]
rs11926063	0.85[CHB][hapmap]
rs13059906	0.90[ASN][1000 genomes]
rs13061548	0.90[ASN][1000 genomes]
rs13062450	0.90[ASN][1000 genomes]
rs13067058	0.85[CHB][hapmap]
rs13069467	0.90[ASN][1000 genomes]
rs13069750	0.87[ASN][1000 genomes]
rs13069845	0.90[ASN][1000 genomes]
rs13070099	0.85[CHB][hapmap]
rs13073976	0.85[CHB][hapmap]
rs13075270	0.85[CHB][hapmap]
rs13075836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13080979	0.90[ASN][1000 genomes]
rs13082995	0.93[ASN][1000 genomes]
rs13083881	0.90[ASN][1000 genomes]
rs13083914	0.90[ASN][1000 genomes]
rs13084057	0.90[ASN][1000 genomes]
rs13084175	0.90[ASN][1000 genomes]
rs13088766	0.85[CHB][hapmap]
rs13089907	0.90[ASN][1000 genomes]
rs13090848	0.90[ASN][1000 genomes]
rs13092160	0.85[CHB][hapmap]
rs13095946	0.85[CHB][hapmap]
rs13096307	0.85[CHB][hapmap]
rs13096325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13096371	0.85[CHB][hapmap]
rs13096873	0.81[ASN][1000 genomes]
rs13097340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13097666	0.87[ASN][1000 genomes]
rs13098911	0.90[ASN][1000 genomes]
rs13100243	0.85[CHB][hapmap]
rs1542755	0.85[CHB][hapmap]
rs17216717	0.90[ASN][1000 genomes]
rs17217831	0.85[CHB][hapmap]
rs17282797	0.90[ASN][1000 genomes]
rs17282922	0.90[ASN][1000 genomes]
rs17283712	0.82[CHB][hapmap]
rs2373156	0.85[CHB][hapmap]
rs3091314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3136667	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3136672	0.93[ASN][1000 genomes]
rs3136673	0.93[ASN][1000 genomes]
rs3176825	0.85[CHB][hapmap]
rs3176826	0.85[CHB][hapmap]
rs3181076	0.85[CHB][hapmap]
rs3181080	0.85[CHB][hapmap]
rs34013035	0.87[ASN][1000 genomes]
rs34059564	0.87[ASN][1000 genomes]
rs34101673	0.87[ASN][1000 genomes]
rs34134191	0.87[ASN][1000 genomes]
rs34198655	0.90[ASN][1000 genomes]
rs34340501	0.87[ASN][1000 genomes]
rs34378541	0.90[ASN][1000 genomes]
rs34401473	0.87[ASN][1000 genomes]
rs34409248	0.87[ASN][1000 genomes]
rs34523728	0.87[ASN][1000 genomes]
rs34567015	0.90[ASN][1000 genomes]
rs34570200	0.87[ASN][1000 genomes]
rs34611049	0.93[ASN][1000 genomes]
rs34693386	0.87[ASN][1000 genomes]
rs34870159	0.90[ASN][1000 genomes]
rs34897745	0.87[ASN][1000 genomes]
rs34920132	0.90[ASN][1000 genomes]
rs34996127	0.87[ASN][1000 genomes]
rs35111399	0.93[ASN][1000 genomes]
rs35178150	0.80[ASN][1000 genomes]
rs35288652	0.90[ASN][1000 genomes]
rs35434266	0.90[ASN][1000 genomes]
rs35560301	0.87[ASN][1000 genomes]
rs35566550	0.90[ASN][1000 genomes]
rs35685805	0.90[ASN][1000 genomes]
rs35754688	0.87[ASN][1000 genomes]
rs35853141	0.87[ASN][1000 genomes]
rs35919278	0.90[ASN][1000 genomes]
rs35942803	0.90[ASN][1000 genomes]
rs35960950	0.81[ASN][1000 genomes]
rs36010446	0.90[ASN][1000 genomes]
rs36189995	0.90[ASN][1000 genomes]
rs3774630	0.93[ASN][1000 genomes]
rs4443214	0.80[ASN][1000 genomes]
rs4493469	0.87[ASN][1000 genomes]
rs4987053	0.85[CHB][hapmap]
rs6765904	0.87[ASN][1000 genomes]
rs6775046	0.82[CHB][hapmap]
rs71327035	0.87[ASN][1000 genomes]
rs71327036	0.87[ASN][1000 genomes]
rs71327038	0.87[ASN][1000 genomes]
rs7620586	0.82[CHB][hapmap]
rs7624155	0.85[CHB][hapmap]
rs7628489	0.82[CHB][hapmap]
rs7631551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7651539	0.85[CHB][hapmap]
rs9832730	0.85[CHB][hapmap]
rs9838191	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46235400-46247600	Weak transcription	Placenta	Placenta
2	chr3:46235400-46249600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:46239600-46243800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:46239800-46249400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:46241000-46244600	Weak transcription	Spleen	Spleen
6	chr3:46241200-46246600	Genic enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:46241600-46247400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:46242400-46246800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:46242600-46243000	Enhancers	Fetal Lung	lung
10	chr3:46242600-46243200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:46242800-46243200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:46242800-46243200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:46242800-46243200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:46242800-46247400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links