Variant report
| Variant | rs1313925 |
|---|---|
| Chromosome Location | chr4:103377576-103377577 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:103376455..103379369-chr4:103790006..103791637,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000109332 | Chromatin interaction |
| ENSG00000145354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1037999 | 1.00[CHB][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap] |
| rs1313924 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1314336 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap] |
| rs1811810 | 1.00[CHB][hapmap] |
| rs2045797 | 0.96[CEU][hapmap];0.95[CHB][hapmap] |
| rs2169597 | 0.95[CEU][hapmap] |
| rs230490 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6533014 | 0.80[MEX][hapmap] |
| rs6533015 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap] |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1313925 | SLC39A8 | cis | parietal | SCAN |
| rs1313925 | GSTCD | cis | parietal | SCAN |
| rs1313925 | ADH1A | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
