Variant report

Variant	rs1811810
Chromosome Location	chr4:103360830-103360831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103359723..103361516-chr4:103422795..103425601,2	MCF-7	breast:
2	chr4:103359997..103362095-chr4:103788342..103791320,2	MCF-7	breast:
3	chr4:103358314..103362750-chr4:103421196..103424266,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109332	Chromatin interaction
ENSG00000145354	Chromatin interaction
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1037999	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs1313924	1.00[CHB][hapmap];0.87[MEX][hapmap]
rs1313925	1.00[CHB][hapmap]
rs1314336	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs2045797	0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs230490	1.00[CHB][hapmap]
rs6533014	0.80[GIH][hapmap];0.80[JPT][hapmap]
rs6533015	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs964503	0.80[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1811810	SLC39A8	cis	parietal	SCAN
rs1811810	EIF4E	cis	parietal	SCAN
rs1811810	ADH1A	cis	parietal	SCAN
rs1811810	DDIT4L	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103352400-103363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:103358600-103363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:103359000-103362000	Enhancers	HSMMtube	muscle
4	chr4:103359200-103361400	Enhancers	HSMM	muscle
5	chr4:103359400-103361600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:103359600-103361000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:103359600-103361200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:103359600-103361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:103359600-103361400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:103359600-103361400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:103359600-103361400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:103359600-103361400	Enhancers	Ovary	ovary
13	chr4:103359600-103361400	Enhancers	HMEC	breast
14	chr4:103359600-103361400	Enhancers	NHLF	lung
15	chr4:103359600-103361600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:103359600-103361600	Enhancers	NHEK	skin
17	chr4:103359600-103362000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:103359800-103361200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:103359800-103361400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:103359800-103361400	Enhancers	NH-A	brain
21	chr4:103359800-103361600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:103359800-103361600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:103359800-103361800	Enhancers	HepG2	liver
24	chr4:103359800-103362800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:103360000-103361200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:103360000-103361200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:103360000-103361200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:103360000-103361200	Enhancers	Brain Angular Gyrus	brain
29	chr4:103360000-103361400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:103360000-103361400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:103360000-103361400	Enhancers	Adipose Nuclei	Adipose
32	chr4:103360000-103361400	Enhancers	Brain Anterior Caudate	brain
33	chr4:103360000-103361400	Enhancers	Brain Cingulate Gyrus	brain
34	chr4:103360000-103361400	Enhancers	Brain Hippocampus Middle	brain
35	chr4:103360000-103361400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr4:103360000-103361400	Enhancers	Brain Substantia Nigra	brain
37	chr4:103360000-103361400	Enhancers	Colon Smooth Muscle	Colon
38	chr4:103360000-103361400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr4:103360000-103361400	Enhancers	Osteobl	bone
40	chr4:103360000-103361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr4:103360000-103361800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:103360000-103361800	Enhancers	Liver	Liver
43	chr4:103360200-103361000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr4:103360200-103361400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:103360200-103361400	Enhancers	Brain Germinal Matrix	brain
46	chr4:103360200-103361400	Enhancers	Pancreas	Pancrea
47	chr4:103360200-103361400	Enhancers	Rectal Smooth Muscle	rectum
48	chr4:103360200-103361400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr4:103360200-103361600	Flanking Active TSS	A549	lung
50	chr4:103360200-103362000	Enhancers	Fetal Lung	lung

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