Variant report

Variant	rs2045797
Chromosome Location	chr4:103353074-103353075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
SLC39A8	TF binding region
ENSG00000248161	TF binding region
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction
ENSG00000138821	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1037999	0.95[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs1313924	0.95[CHB][hapmap]
rs1313925	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs1314336	0.95[CHB][hapmap]
rs1811810	0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2045798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2169597	1.00[CEU][hapmap]
rs230490	0.96[CEU][hapmap];0.95[CHB][hapmap]
rs2903280	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6533013	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6533014	0.83[GIH][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs6533015	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs964503	0.80[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103352400-103363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:103352600-103354000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:103352600-103359000	Weak transcription	Hela-S3	cervix
4	chr4:103352800-103353200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:103352800-103353200	Enhancers	Dnd41	blood
6	chr4:103352800-103360000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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