Variant report

Variant	rs13177504
Chromosome Location	chr5:124461838-124461839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10455044	1.00[ASN][1000 genomes]
rs11746916	0.81[EUR][1000 genomes]
rs12152877	1.00[ASN][1000 genomes]
rs13156065	1.00[ASN][1000 genomes]
rs13167251	1.00[ASN][1000 genomes]
rs13170418	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171701	1.00[ASN][1000 genomes]
rs13178310	1.00[ASN][1000 genomes]
rs13179795	1.00[ASN][1000 genomes]
rs13181069	1.00[ASN][1000 genomes]
rs13185999	1.00[ASN][1000 genomes]
rs1550362	0.81[EUR][1000 genomes]
rs1550363	0.81[EUR][1000 genomes]
rs2196839	1.00[ASN][1000 genomes]
rs33997957	1.00[ASN][1000 genomes]
rs34190797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34285348	1.00[ASN][1000 genomes]
rs34735920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34886855	1.00[ASN][1000 genomes]
rs34990521	1.00[ASN][1000 genomes]
rs35129313	1.00[ASN][1000 genomes]
rs35248489	1.00[ASN][1000 genomes]
rs35456753	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35655256	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728314	1.00[ASN][1000 genomes]
rs35761814	1.00[ASN][1000 genomes]
rs35967749	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35993487	1.00[ASN][1000 genomes]
rs35996109	1.00[ASN][1000 genomes]
rs36109016	1.00[ASN][1000 genomes]
rs36148580	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4836143	1.00[ASN][1000 genomes]
rs58039939	1.00[ASN][1000 genomes]
rs62373296	1.00[ASN][1000 genomes]
rs62373297	1.00[ASN][1000 genomes]
rs71576805	1.00[ASN][1000 genomes]
rs71576807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576809	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576810	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71594396	1.00[ASN][1000 genomes]
rs72778784	1.00[ASN][1000 genomes]
rs9686495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124456200-124470000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:124456200-124470200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:124456400-124465000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:124460600-124462200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:124461200-124462400	Enhancers	Fetal Heart	heart
6	chr5:124461400-124465200	Weak transcription	NHDF-Ad	bronchial
7	chr5:124461400-124468200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:124461600-124462800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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