Variant report

Variant	rs34990521
Chromosome Location	chr5:124425380-124425381
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455044	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152877	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156065	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167251	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170418	1.00[ASN][1000 genomes]
rs13171701	1.00[ASN][1000 genomes]
rs13177504	1.00[ASN][1000 genomes]
rs13178310	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179795	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181069	1.00[ASN][1000 genomes]
rs13185999	1.00[ASN][1000 genomes]
rs2196839	1.00[ASN][1000 genomes]
rs33997957	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34190797	1.00[ASN][1000 genomes]
rs34285348	1.00[ASN][1000 genomes]
rs34735920	1.00[ASN][1000 genomes]
rs34886855	1.00[ASN][1000 genomes]
rs35129313	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248489	1.00[ASN][1000 genomes]
rs35456753	1.00[ASN][1000 genomes]
rs35655256	1.00[ASN][1000 genomes]
rs35728314	1.00[ASN][1000 genomes]
rs35761814	1.00[ASN][1000 genomes]
rs35967749	1.00[ASN][1000 genomes]
rs35993487	1.00[ASN][1000 genomes]
rs35996109	1.00[ASN][1000 genomes]
rs36109016	1.00[ASN][1000 genomes]
rs4836143	1.00[ASN][1000 genomes]
rs58039939	1.00[ASN][1000 genomes]
rs62373296	1.00[ASN][1000 genomes]
rs62373297	1.00[ASN][1000 genomes]
rs71576805	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576807	1.00[ASN][1000 genomes]
rs71576809	1.00[ASN][1000 genomes]
rs71576810	1.00[ASN][1000 genomes]
rs71594396	1.00[ASN][1000 genomes]
rs72778784	1.00[ASN][1000 genomes]
rs9686495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019740	chr5:124394818-124431220	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124420000-124428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:124420000-124429000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124420200-124429400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:124422200-124428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:124424400-124430000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:124424800-124429400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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