Variant report

Variant	rs13185999
Chromosome Location	chr5:124408266-124408267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10455044	1.00[ASN][1000 genomes]
rs12152877	1.00[ASN][1000 genomes]
rs13156065	1.00[ASN][1000 genomes]
rs13156954	0.89[EUR][1000 genomes]
rs13166517	0.92[EUR][1000 genomes]
rs13167251	1.00[ASN][1000 genomes]
rs13167636	0.89[EUR][1000 genomes]
rs13170418	1.00[ASN][1000 genomes]
rs13171701	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177504	1.00[ASN][1000 genomes]
rs13178310	1.00[ASN][1000 genomes]
rs13179795	1.00[ASN][1000 genomes]
rs13181069	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33997957	1.00[ASN][1000 genomes]
rs34190797	1.00[ASN][1000 genomes]
rs34285348	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735920	1.00[ASN][1000 genomes]
rs34881137	0.92[EUR][1000 genomes]
rs34886855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990521	1.00[ASN][1000 genomes]
rs35129313	1.00[ASN][1000 genomes]
rs35248489	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35456753	1.00[ASN][1000 genomes]
rs35655256	1.00[ASN][1000 genomes]
rs35728314	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35761814	1.00[ASN][1000 genomes]
rs35967749	1.00[ASN][1000 genomes]
rs35993487	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996109	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36056892	0.92[EUR][1000 genomes]
rs36109016	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342331	0.92[EUR][1000 genomes]
rs4836143	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57154044	0.89[EUR][1000 genomes]
rs58039939	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576805	1.00[ASN][1000 genomes]
rs71576807	1.00[ASN][1000 genomes]
rs71576809	1.00[ASN][1000 genomes]
rs71576810	1.00[ASN][1000 genomes]
rs71594396	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71594399	0.94[EUR][1000 genomes]
rs72778784	1.00[ASN][1000 genomes]
rs9686495	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019740	chr5:124394818-124431220	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv980721	chr5:124407289-124411161	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124401000-124424200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124406000-124411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:124408000-124408600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links