Variant report

Variant	rs35967749
Chromosome Location	chr5:124481090-124481091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124478793..124481294-chr5:124482364..124483984,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10455044	1.00[ASN][1000 genomes]
rs11746916	0.96[EUR][1000 genomes]
rs12152877	1.00[ASN][1000 genomes]
rs13156065	1.00[ASN][1000 genomes]
rs13167251	1.00[ASN][1000 genomes]
rs13170418	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171701	1.00[ASN][1000 genomes]
rs13177504	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178310	1.00[ASN][1000 genomes]
rs13179795	1.00[ASN][1000 genomes]
rs13181069	1.00[ASN][1000 genomes]
rs13185999	1.00[ASN][1000 genomes]
rs1550362	0.96[EUR][1000 genomes]
rs1550363	0.96[EUR][1000 genomes]
rs2196839	1.00[ASN][1000 genomes]
rs33997957	1.00[ASN][1000 genomes]
rs34190797	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34285348	1.00[ASN][1000 genomes]
rs34735920	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34886855	1.00[ASN][1000 genomes]
rs34990521	1.00[ASN][1000 genomes]
rs35129313	1.00[ASN][1000 genomes]
rs35248489	1.00[ASN][1000 genomes]
rs35456753	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35655256	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728314	1.00[ASN][1000 genomes]
rs35761814	1.00[ASN][1000 genomes]
rs35993487	1.00[ASN][1000 genomes]
rs35996109	1.00[ASN][1000 genomes]
rs36109016	1.00[ASN][1000 genomes]
rs36148580	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4836143	1.00[ASN][1000 genomes]
rs58039939	1.00[ASN][1000 genomes]
rs62373296	1.00[ASN][1000 genomes]
rs62373297	1.00[ASN][1000 genomes]
rs71576805	1.00[ASN][1000 genomes]
rs71576807	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576809	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576810	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71594396	1.00[ASN][1000 genomes]
rs72778784	1.00[ASN][1000 genomes]
rs9686495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124471400-124484600	Weak transcription	HSMM	muscle
2	chr5:124477200-124488200	Weak transcription	HUVEC	blood vessel
3	chr5:124477400-124484600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:124478800-124484200	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links