Variant report

Variant	rs13178396
Chromosome Location	chr5:107317247-107317248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10035207	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10036177	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10038556	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10043569	0.91[EUR][1000 genomes]
rs10055821	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10058249	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13157529	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174010	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1422147	1.00[AFR][1000 genomes]
rs28526654	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28576367	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640040	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34288950	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34768879	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846952	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35478096	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575289	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4957546	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957732	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957734	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57099988	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6882485	0.85[EUR][1000 genomes]
rs9885456	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
4	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
7	chr5:107313800-107321000	Weak transcription	Lung	lung
8	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:107315200-107317400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:107316200-107318400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:107316200-107320000	Weak transcription	Dnd41	blood
14	chr5:107317000-107317400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:107317000-107317400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links