Variant report

Variant	rs13157529
Chromosome Location	chr5:107320882-107320883
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10035207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10036177	0.82[EUR][1000 genomes]
rs10038556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10043569	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10055821	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058249	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13174010	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs13178396	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1422147	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28526654	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28576367	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28640040	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34288950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34768879	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34846952	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35478096	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35575289	0.84[EUR][1000 genomes]
rs4957546	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957732	0.82[EUR][1000 genomes]
rs4957734	1.00[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57099988	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6864189	0.83[EUR][1000 genomes]
rs6882485	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9328028	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9885456	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107313800-107321000	Weak transcription	Lung	lung
4	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:107318800-107321000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107319000-107321000	Weak transcription	Fetal Heart	heart
7	chr5:107319200-107321000	Weak transcription	Left Ventricle	heart
8	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
10	chr5:107320000-107321600	Enhancers	Dnd41	blood
11	chr5:107320400-107321600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:107320600-107321400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:107320800-107321200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:107320800-107321200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:107320800-107321400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr5:107320800-107321600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:107320800-107321600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links