Variant report

Variant	rs34846952
Chromosome Location	chr5:107330230-107330231
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10035207	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10038556	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043569	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055821	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058249	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13157529	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13178396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1422147	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28526654	0.82[EUR][1000 genomes]
rs28576367	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28640040	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34288950	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34768879	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35478096	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35575289	0.82[EUR][1000 genomes]
rs4957546	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4957734	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57099988	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6864189	0.86[EUR][1000 genomes]
rs6882485	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9328028	0.87[EUR][1000 genomes]
rs9885456	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:107327400-107332800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:107327400-107332800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:107327400-107353400	Weak transcription	Aorta	Aorta

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