Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035207	0.84[EUR][1000 genomes]
rs10036177	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038556	0.82[EUR][1000 genomes]
rs10043569	0.82[EUR][1000 genomes]
rs10058249	0.81[EUR][1000 genomes]
rs13157529	0.84[EUR][1000 genomes]
rs13174010	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178396	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28526654	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28576367	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34288950	0.81[EUR][1000 genomes]
rs34768879	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34846952	0.82[EUR][1000 genomes]
rs35478096	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957546	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4957732	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957734	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57099988	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6864189	0.80[EUR][1000 genomes]
rs9328028	0.81[EUR][1000 genomes]
rs9885456	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
2	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:107303200-107309200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:107305000-107313400	Weak transcription	Gastric	stomach
10	chr5:107305200-107310000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107305400-107313600	Weak transcription	NHEK	skin
12	chr5:107306000-107308800	Weak transcription	Fetal Brain Male	brain
13	chr5:107306400-107308600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:107307000-107310000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107307000-107310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:107307600-107309800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:107307800-107308600	Weak transcription	Esophagus	oesophagus
18	chr5:107308400-107308600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung

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