Variant report

Variant	rs35478096
Chromosome Location	chr5:107314309-107314310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10035207	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10036177	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10038556	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10043569	0.87[EUR][1000 genomes]
rs10055821	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10058249	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13157529	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13174010	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13178396	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422147	0.88[AFR][1000 genomes]
rs28526654	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28576367	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640040	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34288950	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34768879	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846952	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35575289	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957546	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957732	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4957734	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57099988	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6864189	0.84[EUR][1000 genomes]
rs6882485	0.81[EUR][1000 genomes]
rs9328028	0.85[EUR][1000 genomes]
rs9885456	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
4	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
5	chr5:107311400-107314600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:107312400-107315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:107313400-107316200	Enhancers	Dnd41	blood
9	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:107313600-107314400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:107313600-107314400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:107313600-107316200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:107313800-107314400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:107313800-107315200	Weak transcription	Gastric	stomach
15	chr5:107313800-107315400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:107313800-107316800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
18	chr5:107313800-107321000	Weak transcription	Lung	lung
19	chr5:107314000-107314600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:107314000-107314600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr5:107314000-107315400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:107314000-107316600	Weak transcription	Fetal Kidney	kidney
23	chr5:107314200-107314400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr5:107314200-107314600	Enhancers	Pancreatic Islets	Pancreatic Islet

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