Variant report

Variant	rs13200385
Chromosome Location	chr6:44790200-44790201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44788604..44791132-chr6:44792129..44794044,2	K562	blood:
2	chr6:44783514..44785613-chr6:44788959..44791402,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13195378	1.00[CEU][hapmap]
rs13211134	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13212421	0.83[EUR][1000 genomes]
rs13217105	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361725	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1482881	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16872750	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs16872755	1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs34973168	1.00[CEU][hapmap]
rs3823254	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58195789	0.83[EUR][1000 genomes]
rs58953717	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6458413	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67120049	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67220021	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910103	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915967	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921829	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931343	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6936338	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6939671	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774678	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842105	chr6:44783457-44798701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44777400-44796600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44779600-44796200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44779600-44796600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44779600-44796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:44779600-44796800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:44780000-44798400	Weak transcription	Dnd41	blood
7	chr6:44785200-44795200	Weak transcription	Aorta	Aorta
8	chr6:44785200-44796800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:44785800-44796400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:44786200-44797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:44789200-44794600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:44789200-44796800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:44790200-44790400	Enhancers	H9 Cell Line	embryonic stem cell

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