Variant report

Variant	rs6910103
Chromosome Location	chr6:44698863-44698864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44629072..44631596-chr6:44697653..44700254,3	MCF-7	breast:
2	chr6:44698581..44700175-chr6:45387689..45389869,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDC5L-2	chr6:44698855-44699105	XLOC_005299

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13195378	1.00[CEU][hapmap]
rs13200385	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13212421	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13217105	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361725	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1482881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872533	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872750	0.90[CHB][hapmap]
rs16872755	0.90[CHB][hapmap]
rs227826	0.97[ASN][1000 genomes]
rs34613807	0.98[ASN][1000 genomes]
rs34973168	1.00[CEU][hapmap]
rs58195789	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58953717	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61014575	0.98[ASN][1000 genomes]
rs6458413	0.84[EUR][1000 genomes]
rs67120049	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67220021	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904819	0.98[ASN][1000 genomes]
rs6915967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921829	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931343	1.00[CEU][hapmap];0.91[CHD][hapmap];0.84[EUR][1000 genomes]
rs6936338	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939671	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7770230	0.98[ASN][1000 genomes]
rs7774678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44695800-44701000	Weak transcription	Pancreas	Pancrea
2	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
3	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44697600-44699800	Enhancers	Fetal Kidney	kidney
5	chr6:44697800-44704200	Enhancers	Colon Smooth Muscle	Colon
6	chr6:44698000-44700000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:44698000-44700400	Enhancers	HSMMtube	muscle
8	chr6:44698200-44699200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:44698200-44699200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:44698200-44699200	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr6:44698200-44699200	Enhancers	NH-A	brain
12	chr6:44698200-44699600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:44698200-44699600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:44698200-44699600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:44698200-44699800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:44698200-44699800	Enhancers	HSMM	muscle
17	chr6:44698200-44703800	Enhancers	Placenta	Placenta
18	chr6:44698400-44699200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:44698400-44699400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:44698400-44699600	Enhancers	Fetal Intestine Small	intestine
21	chr6:44698400-44699600	Enhancers	Fetal Stomach	stomach
22	chr6:44698400-44699800	Enhancers	Fetal Intestine Large	intestine
23	chr6:44698400-44699800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr6:44698400-44699800	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:44698400-44699800	Enhancers	NHLF	lung
26	chr6:44698400-44699800	Enhancers	Osteobl	bone
27	chr6:44698400-44700200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:44698400-44700600	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:44698600-44699000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:44698600-44699600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:44698600-44701200	Weak transcription	Fetal Lung	lung
32	chr6:44698600-44701200	Weak transcription	GM12878-XiMat	blood
33	chr6:44698800-44699000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr6:44698800-44699200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:44698800-44699400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:44698800-44699400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:44698800-44699600	Enhancers	Psoas Muscle	Psoas

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