Variant report

Variant	rs13212421
Chromosome Location	chr6:44689694-44689695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44683131..44684675-chr6:44689047..44691268,2	K562	blood:
2	chr6:44689048..44691057-chr6:44692062..44695050,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13195378	1.00[CEU][hapmap]
rs13200385	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs13217105	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1361725	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1482881	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16872533	0.83[EUR][1000 genomes]
rs16872750	0.91[CHB][hapmap]
rs16872755	0.91[CHB][hapmap]
rs227826	0.98[ASN][1000 genomes]
rs34613807	1.00[ASN][1000 genomes]
rs34973168	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs58195789	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58953717	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61014575	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67120049	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67220021	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6904819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6915967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6921829	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6931343	1.00[CEU][hapmap]
rs6936338	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6939671	0.83[EUR][1000 genomes]
rs7770230	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774678	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44667200-44691000	Weak transcription	Right Atrium	heart
2	chr6:44682400-44691000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:44689600-44689800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44689600-44691400	Enhancers	GM12878-XiMat	blood
5	chr6:44689600-44693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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