Variant report

Variant	rs1361725
Chromosome Location	chr6:44752436-44752437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13195378	1.00[CEU][hapmap]
rs13200385	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13212421	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13217105	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482881	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872533	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16872750	0.90[CHB][hapmap]
rs16872755	0.90[CHB][hapmap]
rs227826	0.83[ASN][1000 genomes]
rs227854	0.84[ASW][hapmap]
rs34613807	0.85[ASN][1000 genomes]
rs34973168	1.00[CEU][hapmap]
rs3823254	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs58195789	0.86[ASN][1000 genomes]
rs58953717	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61014575	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67120049	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67220021	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6904819	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6910103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6915967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6921829	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6931343	1.00[CEU][hapmap];0.91[CHD][hapmap]
rs6936338	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939671	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7770230	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7774678	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44751000-44752800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44752000-44752800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:44752400-44753000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:44752400-44753200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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