Variant report

Variant	rs1482881
Chromosome Location	chr6:44698373-44698374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44629072..44631596-chr6:44697653..44700254,3	MCF-7	breast:
2	chr6:44646457..44648183-chr6:44695917..44698549,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13195378	1.00[CEU][hapmap]
rs13200385	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13212421	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13217105	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361725	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872533	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16872750	0.91[CHB][hapmap]
rs16872755	0.91[CHB][hapmap]
rs227826	0.97[ASN][1000 genomes]
rs34613807	0.98[ASN][1000 genomes]
rs34973168	1.00[CEU][hapmap]
rs58195789	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58953717	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61014575	0.98[ASN][1000 genomes]
rs6458413	0.84[EUR][1000 genomes]
rs67120049	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67220021	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904819	0.98[ASN][1000 genomes]
rs6910103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921829	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931343	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6936338	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6939671	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7770230	0.98[ASN][1000 genomes]
rs7774678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44693200-44698400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:44695800-44701000	Weak transcription	Pancreas	Pancrea
3	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
4	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44697600-44699800	Enhancers	Fetal Kidney	kidney
6	chr6:44697800-44704200	Enhancers	Colon Smooth Muscle	Colon
7	chr6:44698000-44698800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:44698000-44700000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:44698000-44700400	Enhancers	HSMMtube	muscle
10	chr6:44698200-44698600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:44698200-44698600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr6:44698200-44699200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:44698200-44699200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:44698200-44699200	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr6:44698200-44699200	Enhancers	NH-A	brain
16	chr6:44698200-44699600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:44698200-44699600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:44698200-44699600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:44698200-44699800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:44698200-44699800	Enhancers	HSMM	muscle
21	chr6:44698200-44703800	Enhancers	Placenta	Placenta

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