Variant report

Variant	rs1323021
Chromosome Location	chr1:227878748-227878749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227750868..227753411-chr1:227876649..227879488,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181450	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12563117	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12563564	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12564736	1.00[EUR][1000 genomes]
rs12564917	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12564929	1.00[EUR][1000 genomes]
rs12565099	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12565109	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12565618	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12565653	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12566390	1.00[EUR][1000 genomes]
rs12566716	1.00[EUR][1000 genomes]
rs12566948	1.00[CHB][hapmap]
rs12567084	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12567160	1.00[EUR][1000 genomes]
rs12567934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568707	1.00[EUR][1000 genomes]
rs13373816	1.00[EUR][1000 genomes]
rs16841323	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16847912	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16847926	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16847929	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16847948	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16847987	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16848026	1.00[EUR][1000 genomes]
rs16848044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848160	1.00[EUR][1000 genomes]
rs16859962	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16860227	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17492440	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17492447	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2101862	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2313220	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34984248	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35703429	1.00[EUR][1000 genomes]
rs4462138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59461077	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6665512	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090936	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090937	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090938	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090948	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090952	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090954	0.81[ASN][1000 genomes]
rs73090985	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090986	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090987	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73090994	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73091000	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73092607	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73092610	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7554851	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7554870	0.81[ASN][1000 genomes]
rs996226	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv873246	chr1:227694948-227884465	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1007479	chr1:227695868-227984466	Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv3327012	chr1:227741102-227890968	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010605	chr1:227770415-228332690	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv945674	chr1:227862668-227899939	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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