The 2.0 version of rSNPBase

Variant report

Variant rs12564917
Chromosome Location chr1:227762278-227762279
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227752000-227766800 Weak transcription Ovary ovary
2 chr1:227752200-227763200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:227752200-227774400 Weak transcription Aorta Aorta
4 chr1:227752400-227763000 Weak transcription Stomach Mucosa stomach
5 chr1:227752400-227763800 Weak transcription HSMMtube muscle
6 chr1:227752400-227766800 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr1:227752400-227780600 Weak transcription Rectal Smooth Muscle rectum
8 chr1:227753600-227763000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr1:227754400-227783600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:227756800-227762400 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:227760200-227773600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr1:227760200-227783800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:227760200-227784600 Weak transcription Fetal Kidney kidney
14 chr1:227760400-227765400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:227760400-227767000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:227760600-227762400 Weak transcription Primary B cells from peripheral blood blood
17 chr1:227760800-227763000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:227760800-227766800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:227760800-227766800 Weak transcription Esophagus oesophagus
20 chr1:227760800-227766800 Weak transcription Fetal Stomach stomach
21 chr1:227760800-227766800 Weak transcription Left Ventricle heart
22 chr1:227760800-227766800 Weak transcription Lung lung
23 chr1:227760800-227766800 Weak transcription Pancreas Pancrea
24 chr1:227760800-227766800 Weak transcription Right Ventricle heart
25 chr1:227760800-227766800 Weak transcription Spleen Spleen
26 chr1:227760800-227767000 Weak transcription Gastric stomach
27 chr1:227760800-227767200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr1:227760800-227767200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:227760800-227772800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:227761000-227767000 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:227761600-227763600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015