Variant report

Variant	rs73099300
Chromosome Location	chr1:227860166-227860167
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227855952..227858398-chr1:227859286..227860995,3	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12563564	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12564917	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12565618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12565653	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12567084	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847912	1.00[AMR][1000 genomes]
rs16847929	1.00[AMR][1000 genomes]
rs16847987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859962	1.00[AMR][1000 genomes]
rs16860227	1.00[AMR][1000 genomes]
rs17492447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2101862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2313220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35703429	1.00[AMR][1000 genomes]
rs57165550	1.00[AMR][1000 genomes]
rs58322371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59404931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59461077	1.00[AMR][1000 genomes]
rs59772630	1.00[AMR][1000 genomes]
rs60835672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61283390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665512	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675470	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090936	1.00[AMR][1000 genomes]
rs73090937	1.00[AMR][1000 genomes]
rs73090938	1.00[AMR][1000 genomes]
rs73090942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090947	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090948	1.00[AMR][1000 genomes]
rs73090952	1.00[AMR][1000 genomes]
rs73090959	1.00[AMR][1000 genomes]
rs73090985	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090986	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73090995	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092646	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093304	1.00[AMR][1000 genomes]
rs73093319	1.00[AMR][1000 genomes]
rs73093328	1.00[AMR][1000 genomes]
rs73093344	1.00[AMR][1000 genomes]
rs73093354	1.00[AMR][1000 genomes]
rs73094528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094558	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094566	0.91[AFR][1000 genomes]
rs73094571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098926	1.00[AMR][1000 genomes]
rs73098933	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101625	1.00[AMR][1000 genomes]
rs73101653	1.00[AMR][1000 genomes]
rs7526436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7546845	1.00[AMR][1000 genomes]
rs7554851	1.00[AMR][1000 genomes]
rs7554870	1.00[AMR][1000 genomes]
rs7555208	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv873246	chr1:227694948-227884465	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1007479	chr1:227695868-227984466	Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv3327012	chr1:227741102-227890968	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010605	chr1:227770415-228332690	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227820600-227861600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr1:227831800-227864000	ZNF genes & repeats	Liver	Liver
3	chr1:227858600-227861000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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