The 2.0 version of rSNPBase

Variant report

Variant rs2313220
Chromosome Location chr1:227778260-227778261
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227752400-227780600 Weak transcription Rectal Smooth Muscle rectum
2 chr1:227754400-227783600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:227760200-227783800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:227760200-227784600 Weak transcription Fetal Kidney kidney
5 chr1:227764400-227778400 Weak transcription HSMMtube muscle
6 chr1:227767200-227779000 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:227767600-227780600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:227767600-227783400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr1:227768000-227783600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:227769800-227780800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr1:227770000-227853800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:227770600-227781200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:227770600-227784400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:227771400-227778800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:227771400-227778800 ZNF genes & repeats Dnd41 blood
16 chr1:227771800-227790600 Weak transcription Left Ventricle heart
17 chr1:227773200-227779600 Weak transcription Esophagus oesophagus
18 chr1:227773200-227783600 Weak transcription Psoas Muscle Psoas
19 chr1:227774600-227783600 Weak transcription Thymus Thymus
20 chr1:227774800-227778400 Weak transcription Fetal Brain Male brain
21 chr1:227774800-227782600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:227774800-227790600 Weak transcription Gastric stomach
23 chr1:227774800-227799200 Weak transcription Stomach Smooth Muscle stomach
24 chr1:227774800-227805000 Weak transcription Brain Hippocampus Middle brain
25 chr1:227775200-227780400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:227775800-227778800 ZNF genes & repeats Duodenum Mucosa Duodenum
27 chr1:227776800-227779000 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:227777000-227778800 ZNF genes & repeats Primary B cells from cord blood blood
29 chr1:227777000-227778800 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
30 chr1:227777200-227786000 Weak transcription A549 lung
31 chr1:227777400-227780600 Weak transcription Fetal Lung lung
32 chr1:227777600-227780400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:227777600-227790600 Weak transcription Ovary ovary
34 chr1:227778000-227778800 ZNF genes & repeats Primary T cells from cord blood blood
35 chr1:227778000-227779800 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
36 chr1:227778200-227783600 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015