The 2.0 version of rSNPBase

Variant report

Variant rs17492447
Chromosome Location chr1:227753917-227753918
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227751800-227756400 Weak transcription Spleen Spleen
2 chr1:227752000-227754000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:227752000-227755600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:227752000-227756200 Weak transcription Gastric stomach
5 chr1:227752000-227756400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:227752000-227756400 Weak transcription Lung lung
7 chr1:227752000-227757400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr1:227752000-227759800 Weak transcription Left Ventricle heart
9 chr1:227752000-227760000 Weak transcription Esophagus oesophagus
10 chr1:227752000-227766800 Weak transcription Ovary ovary
11 chr1:227752200-227754000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:227752200-227754200 Weak transcription Brain Angular Gyrus brain
13 chr1:227752200-227755000 Weak transcription Colonic Mucosa Colon
14 chr1:227752200-227755600 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:227752200-227756200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:227752200-227756400 Weak transcription Right Ventricle heart
17 chr1:227752200-227758200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:227752200-227758800 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr1:227752200-227760000 Weak transcription Fetal Intestine Large intestine
20 chr1:227752200-227763200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:227752200-227774400 Weak transcription Aorta Aorta
22 chr1:227752400-227754000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr1:227752400-227754000 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr1:227752400-227754000 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr1:227752400-227754000 Weak transcription Duodenum Mucosa Duodenum
26 chr1:227752400-227754600 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr1:227752400-227755000 Weak transcription Fetal Thymus thymus
28 chr1:227752400-227755000 Weak transcription HepG2 liver
29 chr1:227752400-227755200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:227752400-227755400 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:227752400-227755600 Weak transcription HSMM muscle
32 chr1:227752400-227755800 Weak transcription NHLF lung
33 chr1:227752400-227756000 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:227752400-227756200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:227752400-227756600 Weak transcription H1 Cell Line embryonic stem cell
36 chr1:227752400-227756600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:227752400-227757000 Weak transcription NHDF-Ad bronchial
38 chr1:227752400-227757400 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr1:227752400-227757600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr1:227752400-227757800 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:227752400-227758000 Weak transcription Osteobl bone
42 chr1:227752400-227758200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr1:227752400-227759600 Weak transcription Primary T cells from cord blood blood
44 chr1:227752400-227759800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:227752400-227759800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:227752400-227759800 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:227752400-227760000 Weak transcription Fetal Kidney kidney
48 chr1:227752400-227760000 Weak transcription Fetal Muscle Leg muscle
49 chr1:227752400-227760000 Weak transcription NHEK skin
50 chr1:227752400-227760200 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015