The 2.0 version of rSNPBase

Variant report

Variant rs12563564
Chromosome Location chr1:227757568-227757569
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227752000-227759800 Weak transcription Left Ventricle heart
2 chr1:227752000-227760000 Weak transcription Esophagus oesophagus
3 chr1:227752000-227766800 Weak transcription Ovary ovary
4 chr1:227752200-227758200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:227752200-227758800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:227752200-227760000 Weak transcription Fetal Intestine Large intestine
7 chr1:227752200-227763200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:227752200-227774400 Weak transcription Aorta Aorta
9 chr1:227752400-227757600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:227752400-227757800 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr1:227752400-227758000 Weak transcription Osteobl bone
12 chr1:227752400-227758200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:227752400-227759600 Weak transcription Primary T cells from cord blood blood
14 chr1:227752400-227759800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:227752400-227759800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:227752400-227759800 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:227752400-227760000 Weak transcription Fetal Kidney kidney
18 chr1:227752400-227760000 Weak transcription Fetal Muscle Leg muscle
19 chr1:227752400-227760000 Weak transcription NHEK skin
20 chr1:227752400-227760200 Weak transcription Fetal Heart heart
21 chr1:227752400-227760200 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:227752400-227763000 Weak transcription Stomach Mucosa stomach
23 chr1:227752400-227763800 Weak transcription HSMMtube muscle
24 chr1:227752400-227766800 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:227752400-227780600 Weak transcription Rectal Smooth Muscle rectum
26 chr1:227752600-227757800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr1:227752600-227757800 Weak transcription Fetal Muscle Trunk muscle
28 chr1:227752600-227757800 Weak transcription Right Atrium heart
29 chr1:227752600-227759800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:227752600-227760000 Weak transcription Primary B cells from peripheral blood blood
31 chr1:227752600-227760000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:227752600-227760000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:227752800-227759400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:227753200-227760000 Weak transcription Small Intestine intestine
35 chr1:227753600-227763000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:227754000-227759800 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr1:227754200-227757600 Weak transcription Fetal Intestine Small intestine
38 chr1:227754200-227760000 Weak transcription Thymus Thymus
39 chr1:227754400-227757600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:227754400-227757600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:227754400-227757800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:227754400-227757800 Weak transcription A549 lung
43 chr1:227754400-227759800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:227754400-227760000 Weak transcription Fetal Stomach stomach
45 chr1:227754400-227783600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr1:227755800-227760000 Weak transcription HSMM muscle
47 chr1:227756200-227758000 Enhancers Pancreas Pancrea
48 chr1:227756800-227757600 Weak transcription Fetal Lung lung
49 chr1:227756800-227759800 Weak transcription K562 blood
50 chr1:227756800-227760000 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015