Variant report

Variant	rs13297827
Chromosome Location	chr9:79062043-79062044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79062041..79063533-chr9:79272880..79274341,6	MCF-7	breast:
2	chr9:79061368..79063776-chr9:79272393..79274903,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11144860	0.93[EUR][1000 genomes]
rs11791134	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13284427	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13284503	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13286468	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13289362	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13290389	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13291010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13292857	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13295158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13295871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13298404	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13299207	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34037675	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34046058	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34283683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34286732	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34307519	0.93[EUR][1000 genomes]
rs34380148	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34434749	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34571197	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34695412	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34922670	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34990453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35012067	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35031885	0.93[EUR][1000 genomes]
rs35089043	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35141782	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35171014	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35184004	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35207397	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35242982	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35363570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35426412	1.00[AMR][1000 genomes]
rs35432738	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35800025	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35862905	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35968404	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36036209	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7046651	0.93[EUR][1000 genomes]
rs71509867	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71509868	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71509870	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509872	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71509879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv520423	chr9:79047117-79065299	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79057200-79062200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:79057200-79062600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:79057400-79062600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:79057400-79062600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:79057400-79062600	Weak transcription	Osteobl	bone
6	chr9:79058000-79062800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:79060000-79062200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:79060000-79062200	Weak transcription	Stomach Mucosa	stomach
9	chr9:79060000-79062600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:79060000-79062600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:79060200-79062600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr9:79061200-79062200	Weak transcription	HSMM	muscle
13	chr9:79061200-79062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:79061400-79062400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:79061400-79062600	Weak transcription	GM12878-XiMat	blood

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