Variant report

Variant	rs35862905
Chromosome Location	chr9:79087869-79087870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79073421..79076264-chr9:79087604..79089143,2	MCF-7	breast:
2	chr9:79086560..79088176-chr9:79091535..79093262,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11144860	0.87[EUR][1000 genomes]
rs11791134	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13284427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13284503	0.87[EUR][1000 genomes]
rs13286468	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13289362	0.87[EUR][1000 genomes]
rs13290389	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13291010	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292857	0.87[EUR][1000 genomes]
rs13295158	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13295871	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13297827	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13298404	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13299207	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34037675	0.87[EUR][1000 genomes]
rs34046058	0.87[EUR][1000 genomes]
rs34283683	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34286732	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34307519	0.87[EUR][1000 genomes]
rs34380148	0.87[EUR][1000 genomes]
rs34434749	0.87[EUR][1000 genomes]
rs34571197	0.87[EUR][1000 genomes]
rs34695412	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34922670	0.87[EUR][1000 genomes]
rs34990453	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35012067	0.87[EUR][1000 genomes]
rs35031885	0.87[EUR][1000 genomes]
rs35089043	0.87[EUR][1000 genomes]
rs35141782	0.84[EUR][1000 genomes]
rs35171014	0.87[EUR][1000 genomes]
rs35184004	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35207397	0.87[EUR][1000 genomes]
rs35242982	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35363570	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35426412	1.00[AMR][1000 genomes]
rs35432738	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35800025	0.87[EUR][1000 genomes]
rs35968404	0.87[EUR][1000 genomes]
rs36036209	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7046651	0.87[EUR][1000 genomes]
rs71509867	0.87[EUR][1000 genomes]
rs71509868	0.87[EUR][1000 genomes]
rs71509870	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509873	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509874	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509875	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509878	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509879	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3483865	chr9:79086125-79088057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3483866	chr9:79086262-79088027	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075400-79089800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:79075400-79090200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:79075400-79101000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
5	chr9:79076000-79088000	Weak transcription	NHDF-Ad	bronchial
6	chr9:79077600-79092800	Weak transcription	Fetal Stomach	stomach
7	chr9:79078600-79092400	Weak transcription	HMEC	breast
8	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:79081400-79088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:79081800-79093000	Weak transcription	Lung	lung
11	chr9:79081800-79117200	Weak transcription	Gastric	stomach
12	chr9:79082600-79117600	Weak transcription	NHLF	lung
13	chr9:79083000-79088800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:79083600-79090200	Weak transcription	HSMM	muscle
15	chr9:79083600-79090400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:79083600-79092800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:79085200-79089000	Genic enhancers	Osteobl	bone
18	chr9:79085200-79093000	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:79085600-79088600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:79085600-79089000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:79085600-79091200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:79085800-79088600	Enhancers	Fetal Intestine Large	intestine
23	chr9:79085800-79088800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr9:79085800-79088800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr9:79085800-79089000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:79085800-79089000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:79085800-79089000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:79086000-79088400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:79086000-79088400	Enhancers	Stomach Mucosa	stomach
30	chr9:79086000-79089000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:79086000-79089000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:79086200-79093400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:79086800-79088000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:79086800-79088200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr9:79086800-79089000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:79086800-79090600	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr9:79086800-79092000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr9:79087000-79088200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:79087000-79089000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:79087200-79088000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:79087200-79088000	Enhancers	Duodenum Mucosa	Duodenum
42	chr9:79087200-79088200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:79087200-79088200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr9:79087200-79088200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:79087200-79088400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:79087200-79088800	Enhancers	Primary hematopoietic stem cells	blood
47	chr9:79087200-79088800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:79087200-79089000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:79087400-79088000	Enhancers	H9 Cell Line	embryonic stem cell
50	chr9:79087400-79088000	Enhancers	Fetal Intestine Small	intestine

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