Variant report

Variant	rs34286732
Chromosome Location	chr9:79093367-79093368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79091609..79094063-chr9:79133864..79136159,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11144860	0.90[EUR][1000 genomes]
rs11791134	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13284427	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13284503	0.90[EUR][1000 genomes]
rs13286468	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13289362	0.90[EUR][1000 genomes]
rs13290389	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13291010	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13292857	0.90[EUR][1000 genomes]
rs13295158	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13295871	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13297827	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13298404	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13299207	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34037675	0.90[EUR][1000 genomes]
rs34046058	0.90[EUR][1000 genomes]
rs34283683	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34307519	0.90[EUR][1000 genomes]
rs34380148	0.90[EUR][1000 genomes]
rs34434749	0.90[EUR][1000 genomes]
rs34571197	0.90[EUR][1000 genomes]
rs34695412	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34922670	0.90[EUR][1000 genomes]
rs34990453	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35012067	0.90[EUR][1000 genomes]
rs35031885	0.90[EUR][1000 genomes]
rs35089043	0.90[EUR][1000 genomes]
rs35141782	0.87[EUR][1000 genomes]
rs35171014	0.90[EUR][1000 genomes]
rs35184004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35207397	0.90[EUR][1000 genomes]
rs35242982	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35363570	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35426412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35432738	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35800025	0.90[EUR][1000 genomes]
rs35862905	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35968404	0.90[EUR][1000 genomes]
rs36036209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7046651	0.90[EUR][1000 genomes]
rs71509867	0.90[EUR][1000 genomes]
rs71509868	0.90[EUR][1000 genomes]
rs71509870	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509872	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509873	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509874	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509875	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509878	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71509879	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075400-79101000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
3	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:79081800-79117200	Weak transcription	Gastric	stomach
5	chr9:79082600-79117600	Weak transcription	NHLF	lung
6	chr9:79086200-79093400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
8	chr9:79088400-79097000	Weak transcription	Stomach Mucosa	stomach
9	chr9:79088800-79093800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:79089000-79100800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:79089000-79103400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:79089000-79116400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:79090000-79094000	Strong transcription	Osteobl	bone
14	chr9:79090400-79094200	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr9:79090600-79094200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr9:79091200-79108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:79092200-79093800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:79092200-79093800	Strong transcription	Fetal Intestine Large	intestine
19	chr9:79092400-79093800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:79092400-79093800	Strong transcription	HMEC	breast
21	chr9:79092400-79093800	Strong transcription	HSMM	muscle
22	chr9:79092600-79093400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
23	chr9:79092600-79093600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr9:79092600-79093600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr9:79092600-79093800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
26	chr9:79092600-79093800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr9:79092600-79093800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr9:79092600-79094200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:79092800-79093400	ZNF genes & repeats	Fetal Stomach	stomach
30	chr9:79092800-79093800	ZNF genes & repeats	Primary B cells from cord blood	blood
31	chr9:79092800-79093800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:79093000-79093400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:79093000-79093400	ZNF genes & repeats	Lung	lung
34	chr9:79093000-79093600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:79093000-79093600	ZNF genes & repeats	Fetal Thymus	thymus
36	chr9:79093000-79093600	Strong transcription	NHDF-Ad	bronchial
37	chr9:79093000-79093800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr9:79093000-79093800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr9:79093000-79093800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr9:79093000-79093800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:79093000-79094200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:79093200-79093400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:79093200-79093600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
44	chr9:79093200-79093800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
45	chr9:79093200-79093800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr9:79093200-79093800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:79093200-79093800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:79093200-79093800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr9:79093200-79093800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:79093200-79093800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links