Variant report

Variant	rs36036209
Chromosome Location	chr9:79077435-79077436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79073732..79077462-chr9:79257559..79261400,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106772	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11144860	0.87[EUR][1000 genomes]
rs11791134	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13284427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13284503	0.87[EUR][1000 genomes]
rs13286468	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13289362	0.87[EUR][1000 genomes]
rs13290389	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13291010	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292857	0.87[EUR][1000 genomes]
rs13295158	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13295871	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13297827	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13298404	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13299207	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34037675	0.87[EUR][1000 genomes]
rs34046058	0.87[EUR][1000 genomes]
rs34283683	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34286732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34307519	0.87[EUR][1000 genomes]
rs34380148	0.87[EUR][1000 genomes]
rs34434749	0.87[EUR][1000 genomes]
rs34571197	0.87[EUR][1000 genomes]
rs34695412	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34922670	0.87[EUR][1000 genomes]
rs34990453	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35012067	0.87[EUR][1000 genomes]
rs35031885	0.87[EUR][1000 genomes]
rs35089043	0.87[EUR][1000 genomes]
rs35141782	0.84[EUR][1000 genomes]
rs35171014	0.87[EUR][1000 genomes]
rs35184004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35207397	0.87[EUR][1000 genomes]
rs35242982	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35363570	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35426412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35432738	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35800025	0.87[EUR][1000 genomes]
rs35862905	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35968404	0.87[EUR][1000 genomes]
rs7046651	0.87[EUR][1000 genomes]
rs71509867	0.87[EUR][1000 genomes]
rs71509868	0.87[EUR][1000 genomes]
rs71509870	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509873	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509874	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509875	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509878	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71509879	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075200-79085200	Weak transcription	Esophagus	oesophagus
2	chr9:79075200-79087200	Weak transcription	Spleen	Spleen
3	chr9:79075400-79078400	Enhancers	Fetal Brain Male	brain
4	chr9:79075400-79079800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:79075400-79080400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:79075400-79086000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:79075400-79086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:79075400-79087200	Weak transcription	Colonic Mucosa	Colon
9	chr9:79075400-79089800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:79075400-79090200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:79075400-79101000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:79075600-79077600	Active TSS	Fetal Stomach	stomach
13	chr9:79075600-79077600	Transcr. at gene 5' and 3'	Osteobl	bone
14	chr9:79075600-79078600	Weak transcription	Small Intestine	intestine
15	chr9:79075600-79080400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:79075600-79083800	Enhancers	Primary B cells from peripheral blood	blood
17	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
18	chr9:79075800-79078800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:79075800-79079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:79075800-79080400	Weak transcription	Fetal Thymus	thymus
21	chr9:79075800-79080600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr9:79076000-79077600	Enhancers	Primary hematopoietic stem cells	blood
23	chr9:79076000-79078200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:79076000-79078200	Weak transcription	Gastric	stomach
25	chr9:79076000-79083600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:79076000-79084000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr9:79076000-79087400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:79076000-79088000	Weak transcription	NHDF-Ad	bronchial
29	chr9:79076200-79077600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
30	chr9:79076200-79078200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr9:79076200-79079000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr9:79076200-79079200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:79076200-79079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:79076200-79079400	Weak transcription	NH-A	brain
35	chr9:79076200-79080600	Weak transcription	NHLF	lung
36	chr9:79076200-79080800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:79076200-79083000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:79076200-79083000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:79076400-79080400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr9:79076600-79077600	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
41	chr9:79076800-79077600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:79076800-79077600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:79076800-79077800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr9:79076800-79078800	Flanking Active TSS	GM12878-XiMat	blood
45	chr9:79076800-79087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:79077000-79077600	Genic enhancers	HSMM	muscle
47	chr9:79077200-79077600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:79077200-79077600	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr9:79077200-79077600	Flanking Active TSS	Stomach Mucosa	stomach
50	chr9:79077200-79078200	Flanking Active TSS	Primary B cells from cord blood	blood

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