Variant report

Variant	rs35363570
Chromosome Location	chr9:79011830-79011831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79011049..79012684-chr9:79015428..79017212,2	MCF-7	breast:
2	chr9:78993024..78994920-chr9:79009980..79012177,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11144860	1.00[EUR][1000 genomes]
rs11791134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13284427	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13284503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13286468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13289362	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13290389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13291010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13292857	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13295158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13295871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13297827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13298404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13299207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17721472	0.86[EUR][1000 genomes]
rs17777982	0.86[EUR][1000 genomes]
rs34037675	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34046058	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34283683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34286732	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34307519	1.00[EUR][1000 genomes]
rs34380148	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34434749	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34571197	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34695412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34922670	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34990453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35012067	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35031885	1.00[EUR][1000 genomes]
rs35089043	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35141782	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs35171014	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35184004	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35207397	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35242982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35426412	1.00[AMR][1000 genomes]
rs35432738	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35800025	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35862905	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35968404	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36036209	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58998344	0.84[EUR][1000 genomes]
rs7046651	1.00[EUR][1000 genomes]
rs71509867	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71509868	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71509870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71509879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79010200-79017000	Weak transcription	NH-A	brain
2	chr9:79010400-79014800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:79010600-79012000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:79010600-79015200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:79010600-79015200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:79010600-79015200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:79010600-79015200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:79010600-79015200	Weak transcription	Placenta	Placenta
9	chr9:79010600-79015400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:79010600-79015400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:79010600-79015400	Weak transcription	HMEC	breast
12	chr9:79010600-79016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:79010600-79016600	Weak transcription	NHLF	lung
14	chr9:79010600-79017000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:79010600-79017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:79010600-79018000	Weak transcription	HUVEC	blood vessel
17	chr9:79010600-79018400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:79010600-79019400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:79010800-79014800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:79010800-79015000	Weak transcription	GM12878-XiMat	blood
21	chr9:79010800-79015400	Weak transcription	A549	lung
22	chr9:79010800-79018400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:79010800-79018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr9:79010800-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:79010800-79018400	Weak transcription	NHDF-Ad	bronchial
26	chr9:79011000-79015000	Weak transcription	Hela-S3	cervix
27	chr9:79011000-79015200	Weak transcription	HepG2	liver
28	chr9:79011000-79018400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:79011000-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:79011000-79018400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:79011200-79015200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:79011200-79015200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:79011200-79018000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:79011200-79018400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr9:79011400-79016800	Weak transcription	Fetal Intestine Small	intestine

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