Variant report

Variant	rs13302213
Chromosome Location	chr9:108725680-108725681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12001396	0.82[EUR][1000 genomes]
rs12004099	0.82[EUR][1000 genomes]
rs16925055	0.82[EUR][1000 genomes]
rs16925065	0.97[EUR][1000 genomes]
rs16925083	1.00[EUR][1000 genomes]
rs17285222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34235964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34773238	0.82[EUR][1000 genomes]
rs34778810	0.83[EUR][1000 genomes]
rs35115335	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56105641	0.82[EUR][1000 genomes]
rs58788162	0.82[EUR][1000 genomes]
rs60607803	1.00[EUR][1000 genomes]
rs61312776	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031020	0.82[EUR][1000 genomes]
rs71494570	0.82[EUR][1000 genomes]
rs71494574	1.00[EUR][1000 genomes]
rs7850106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108720600-108725800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:108720600-108731200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:108721400-108725800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:108721600-108725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:108721600-108725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:108721600-108726200	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:108722000-108725800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:108722000-108729000	Weak transcription	Brain Substantia Nigra	brain
9	chr9:108722200-108726000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:108722400-108725800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:108725200-108726000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:108725400-108726800	Enhancers	Fetal Kidney	kidney
13	chr9:108725600-108726000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:108725600-108726000	Enhancers	Fetal Stomach	stomach
15	chr9:108725600-108726400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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