Variant report

Variant	rs34778810
Chromosome Location	chr9:108830793-108830794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13302213	0.83[EUR][1000 genomes]
rs16925065	0.81[EUR][1000 genomes]
rs16925083	0.83[EUR][1000 genomes]
rs17285222	0.83[EUR][1000 genomes]
rs34235964	0.81[EUR][1000 genomes]
rs60607803	0.83[EUR][1000 genomes]
rs61312776	0.81[EUR][1000 genomes]
rs71494574	0.83[EUR][1000 genomes]
rs7850106	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047713	chr9:108759593-108921872	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108820200-108831400	Weak transcription	HMEC	breast
2	chr9:108830200-108831200	Weak transcription	Fetal Heart	heart
3	chr9:108830400-108831000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:108830600-108833400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:108830600-108833800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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