Variant report
| Variant | rs16925065 |
|---|---|
| Chromosome Location | chr9:108689226-108689227 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12001361 | 0.84[AFR][1000 genomes] |
| rs12001396 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12004099 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13302213 | 0.97[EUR][1000 genomes] |
| rs16925055 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs16925083 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17285222 | 0.97[EUR][1000 genomes] |
| rs1987249 | 0.84[AFR][1000 genomes] |
| rs34235964 | 1.00[EUR][1000 genomes] |
| rs34773238 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34778810 | 0.81[EUR][1000 genomes] |
| rs35115335 | 0.85[EUR][1000 genomes] |
| rs56105641 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs58788162 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs60607803 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61312776 | 1.00[EUR][1000 genomes] |
| rs7031020 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71494570 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71494574 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7847775 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7850106 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7861494 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893694 | chr9:108486533-108854018 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041073 | chr9:108535813-108731343 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052684 | chr9:108582944-108730280 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv615140 | chr9:108592589-108725567 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv831679 | chr9:108603112-108785347 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:108686200-108692000 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 2 | chr9:108688800-108690800 | Weak transcription | Fetal Heart | heart |
