Variant report

Variant	rs7850106
Chromosome Location	chr9:108731664-108731665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108730359..108732528-chr9:108735716..108738516,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12001396	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12004099	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13302213	1.00[EUR][1000 genomes]
rs16925055	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925065	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16925083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17285222	1.00[EUR][1000 genomes]
rs34235964	0.97[EUR][1000 genomes]
rs34773238	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34778810	0.83[EUR][1000 genomes]
rs35115335	0.82[EUR][1000 genomes]
rs56105641	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58788162	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60607803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61312776	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031020	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71494570	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71494574	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7847775	0.92[AMR][1000 genomes]
rs7861494	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108726800-108736800	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:108728200-108732600	Enhancers	Fetal Brain Male	brain
3	chr9:108728800-108733800	Enhancers	Brain Cingulate Gyrus	brain
4	chr9:108729000-108736800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:108729400-108732200	Enhancers	Brain Germinal Matrix	brain
6	chr9:108729400-108732800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:108729400-108733000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:108729600-108732800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:108729600-108732800	Enhancers	Brain Hippocampus Middle	brain
10	chr9:108729600-108733400	Enhancers	Brain Substantia Nigra	brain
11	chr9:108730000-108733600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:108730200-108732000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:108730200-108732600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:108730200-108732800	Enhancers	Brain Angular Gyrus	brain
15	chr9:108730800-108733000	Enhancers	Brain Anterior Caudate	brain
16	chr9:108731000-108731800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:108731200-108731800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:108731200-108731800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:108731200-108732000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:108731200-108732400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:108731400-108732200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:108731400-108732600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:108731400-108732600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:108731600-108731800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr9:108731600-108732000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:108731600-108732200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:108731600-108732400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:108731600-108732600	Enhancers	Fetal Brain Female	brain
29	chr9:108731600-108732800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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