Variant report

Variant	rs61312776
Chromosome Location	chr9:108716193-108716194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:108660253..108666422-chr9:108715149..108718235,9	MCF-7	breast:
2	chr9:108674841..108675762-chr9:108716167..108716908,4	MCF-7	breast:
3	chr9:108674827..108675859-chr9:108716075..108716996,5	MCF-7	breast:
4	chr9:108669187..108678029-chr9:108711816..108723206,29	MCF-7	breast:
5	chr9:108715942..108718890-chr9:109624483..109628580,4	MCF-7	breast:
6	chr9:108663816..108664349-chr9:108716067..108716712,2	MCF-7	breast:
7	chr9:108715283..108717555-chr9:109046666..109048647,2	MCF-7	breast:
8	chr9:108674706..108675762-chr9:108716067..108717001,6	MCF-7	breast:
9	chr9:108715768..108718223-chr9:108919193..108921153,2	MCF-7	breast:
10	chr9:108671913..108676613-chr9:108714105..108718467,7	MCF-7	breast:
11	chr9:108716073..108716703-chr9:109893850..109894510,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148143	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12001396	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12004099	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13302213	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16925055	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16925065	1.00[EUR][1000 genomes]
rs16925083	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17285222	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34235964	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34773238	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34778810	0.81[EUR][1000 genomes]
rs35115335	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56105641	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58788162	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60435911	0.82[AFR][1000 genomes]
rs60607803	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031020	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71494570	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71494574	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7847775	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7850106	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861494	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1047166	chr9:108693810-108921872	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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