Variant report

Variant	rs13317343
Chromosome Location	chr3:17804370-17804371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13433975	1.00[YRI][hapmap]
rs13434330	1.00[YRI][hapmap]
rs6800330	1.00[YRI][hapmap]
rs9310531	1.00[YRI][hapmap]
rs9825932	1.00[YRI][hapmap]
rs9833117	1.00[YRI][hapmap]
rs9833234	1.00[YRI][hapmap]
rs9837459	1.00[YRI][hapmap]
rs9877829	1.00[YRI][hapmap]
rs9882280	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17801800-17804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:17802000-17804600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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