Variant report

Variant	rs9877829
Chromosome Location	chr3:17794492-17794493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17790074..17792070-chr3:17793547..17797014,3	K562	blood:
2	chr3:17782880..17786441-chr3:17793354..17797448,5	MCF-7	breast:
3	chr3:17787258..17788942-chr3:17794142..17796862,2	MCF-7	breast:
4	chr3:17782468..17785976-chr3:17793028..17797546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13317343	1.00[YRI][hapmap]
rs13433975	1.00[YRI][hapmap]
rs13434330	1.00[YRI][hapmap]
rs3922900	1.00[AFR][1000 genomes]
rs6800330	1.00[YRI][hapmap]
rs9310531	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9755011	1.00[YRI][hapmap]
rs9825932	1.00[YRI][hapmap]
rs9827555	1.00[YRI][hapmap]
rs9833117	1.00[YRI][hapmap]
rs9833234	1.00[YRI][hapmap]
rs9837459	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9851997	1.00[AFR][1000 genomes]
rs9861797	1.00[AFR][1000 genomes]
rs9882280	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17789400-17794800	Weak transcription	HSMMtube	muscle
2	chr3:17789600-17795000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:17790600-17795200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:17791200-17800800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:17791400-17796800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:17791600-17794600	Weak transcription	Stomach Mucosa	stomach
7	chr3:17791600-17794800	Weak transcription	HepG2	liver
8	chr3:17791600-17796800	Weak transcription	HMEC	breast
9	chr3:17791600-17796800	Weak transcription	NHEK	skin
10	chr3:17791800-17797200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:17791800-17797200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:17792200-17797000	Weak transcription	GM12878-XiMat	blood
13	chr3:17792200-17797200	Weak transcription	Dnd41	blood
14	chr3:17793400-17795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:17793600-17795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:17793800-17795400	Enhancers	Adipose Nuclei	Adipose
17	chr3:17794000-17795400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:17794000-17795400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:17794000-17795400	Enhancers	NHDF-Ad	bronchial
20	chr3:17794000-17795600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:17794000-17795600	Enhancers	Fetal Muscle Leg	muscle
22	chr3:17794000-17795600	Enhancers	Pancreas	Pancrea
23	chr3:17794200-17795600	Enhancers	Liver	Liver
24	chr3:17794200-17795600	Enhancers	K562	blood

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