Variant report

Variant	rs13433975
Chromosome Location	chr3:17606576-17606577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12330131	1.00[YRI][hapmap]
rs13315493	1.00[AFR][1000 genomes]
rs13317343	1.00[YRI][hapmap]
rs13434330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6800330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9755011	1.00[YRI][hapmap]
rs9811209	1.00[AFR][1000 genomes]
rs9824370	1.00[AFR][1000 genomes]
rs9825932	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9827555	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9828600	1.00[YRI][hapmap]
rs9833117	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9833234	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9837459	1.00[YRI][hapmap]
rs9849980	1.00[YRI][hapmap]
rs9874918	1.00[AFR][1000 genomes]
rs9877829	1.00[YRI][hapmap]
rs9882280	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17575000-17607600	Weak transcription	Dnd41	blood
2	chr3:17575000-17613400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:17580000-17619400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:17584000-17613200	Weak transcription	GM12878-XiMat	blood
5	chr3:17584200-17608600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:17587000-17613600	Weak transcription	Primary B cells from cord blood	blood
7	chr3:17596000-17619600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:17600400-17610400	Weak transcription	A549	lung
9	chr3:17603600-17607400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links