Variant report

Variant	rs9833234
Chromosome Location	chr3:17680552-17680553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17679433..17681398-chr3:17682800..17684516,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13315493	1.00[AFR][1000 genomes]
rs13317343	1.00[YRI][hapmap]
rs13433975	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13434330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6800330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9310531	1.00[YRI][hapmap]
rs9755011	1.00[YRI][hapmap]
rs9811209	1.00[AFR][1000 genomes]
rs9824370	1.00[AFR][1000 genomes]
rs9825932	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9827555	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9833117	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9837459	1.00[YRI][hapmap]
rs9874918	1.00[AFR][1000 genomes]
rs9877829	1.00[YRI][hapmap]
rs9882280	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17650800-17681200	Weak transcription	Aorta	Aorta
2	chr3:17656000-17681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:17657800-17681200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:17664800-17688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:17664800-17689000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:17668800-17706200	Weak transcription	Primary B cells from cord blood	blood
7	chr3:17673400-17681200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:17674000-17690800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:17674200-17681000	Weak transcription	HSMMtube	muscle
10	chr3:17674200-17687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:17674400-17680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:17677200-17681000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:17677400-17681000	Weak transcription	K562	blood
14	chr3:17677400-17681200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:17677600-17681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:17677600-17681200	Weak transcription	Left Ventricle	heart
17	chr3:17677600-17681200	Weak transcription	Right Atrium	heart
18	chr3:17677600-17686800	Weak transcription	Small Intestine	intestine
19	chr3:17679200-17680600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:17679200-17680800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:17679200-17681000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:17679200-17681200	Enhancers	NHDF-Ad	bronchial
23	chr3:17679200-17681400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr3:17679200-17681600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:17679200-17681800	Enhancers	HMEC	breast
26	chr3:17679400-17681000	Enhancers	Osteobl	bone
27	chr3:17679400-17683000	Enhancers	NHLF	lung
28	chr3:17679600-17681600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:17679600-17681800	Enhancers	Hela-S3	cervix
30	chr3:17679600-17682000	Enhancers	HSMM	muscle
31	chr3:17679800-17681000	Enhancers	NHEK	skin
32	chr3:17679800-17681200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:17679800-17681800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:17679800-17682600	Enhancers	HUVEC	blood vessel
35	chr3:17680000-17680600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:17680000-17681000	Weak transcription	Adipose Nuclei	Adipose
37	chr3:17680000-17681000	Enhancers	NH-A	brain
38	chr3:17680000-17681800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:17680200-17682200	Active TSS	A549	lung
40	chr3:17680400-17680800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr3:17680400-17681400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:17680400-17681600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:17680400-17681600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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