The 2.0 version of rSNPBase

Variant report

Variant rs13323280
Chromosome Location chr3:179484057-179484058
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
7 chr3:179449400-179503400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr3:179450000-179484200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr3:179450000-179487200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:179450400-179491800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr3:179453200-179507600 Weak transcription NHEK skin
12 chr3:179461000-179487400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr3:179461000-179487800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr3:179462000-179484200 Weak transcription Muscle Satellite Cultured Cells --
15 chr3:179463000-179491800 Weak transcription Spleen Spleen
16 chr3:179463000-179492200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:179463600-179492200 Weak transcription Right Atrium heart
18 chr3:179467600-179503200 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr3:179469000-179489000 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr3:179469800-179486600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr3:179469800-179486600 Strong transcription Skeletal Muscle Female skeletal muscle
22 chr3:179470200-179486400 Strong transcription Skeletal Muscle Male skeletal muscle
23 chr3:179472600-179486600 Strong transcription HUES48 Cell Line embryonic stem cell
24 chr3:179472800-179510200 Weak transcription Psoas Muscle Psoas
25 chr3:179473000-179484200 Weak transcription Fetal Brain Male brain
26 chr3:179474200-179484200 Weak transcription NHLF lung
27 chr3:179474600-179486400 Strong transcription HepG2 liver
28 chr3:179474800-179485200 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr3:179475200-179503200 Weak transcription Fetal Kidney kidney
30 chr3:179475800-179484200 Weak transcription Brain Germinal Matrix brain
31 chr3:179476200-179484200 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr3:179476200-179512200 Weak transcription Gastric stomach
33 chr3:179477800-179485200 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr3:179478400-179486000 Strong transcription Dnd41 blood
35 chr3:179478600-179486000 Weak transcription Primary hematopoietic stem cells blood
36 chr3:179479000-179484400 Weak transcription NH-A brain
37 chr3:179479000-179493400 Weak transcription Esophagus oesophagus
38 chr3:179479000-179502600 Weak transcription Rectal Smooth Muscle rectum
39 chr3:179479000-179506200 Weak transcription Small Intestine intestine
40 chr3:179479200-179484200 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr3:179479200-179484200 Weak transcription GM12878-XiMat blood
42 chr3:179479200-179484400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr3:179479200-179489000 Weak transcription Brain Substantia Nigra brain
44 chr3:179479200-179492800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr3:179479200-179493200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr3:179479200-179499400 Weak transcription Thymus Thymus
47 chr3:179479200-179500800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
48 chr3:179479400-179484200 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr3:179479400-179484400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr3:179479400-179488800 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015