Variant report

Variant	rs9828199
Chromosome Location	chr3:179487776-179487777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13323280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34021703	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780256	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791474	1.00[EUR][1000 genomes]
rs6791555	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73885933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621675	0.90[AFR][1000 genomes]
rs9290682	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9811751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832389	1.00[EUR][1000 genomes]
rs9845333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847180	1.00[EUR][1000 genomes]
rs9850496	1.00[EUR][1000 genomes]
rs9866853	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179437400-179490200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:179438400-179489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:179450400-179491800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:179453200-179507600	Weak transcription	NHEK	skin
8	chr3:179461000-179487800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:179463000-179491800	Weak transcription	Spleen	Spleen
10	chr3:179463000-179492200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:179463600-179492200	Weak transcription	Right Atrium	heart
12	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:179469000-179489000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
15	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
16	chr3:179476200-179512200	Weak transcription	Gastric	stomach
17	chr3:179479000-179493400	Weak transcription	Esophagus	oesophagus
18	chr3:179479000-179502600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
20	chr3:179479200-179489000	Weak transcription	Brain Substantia Nigra	brain
21	chr3:179479200-179492800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:179479200-179493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:179479200-179499400	Weak transcription	Thymus	Thymus
24	chr3:179479200-179500800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:179479400-179488800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:179479400-179491800	Weak transcription	Fetal Intestine Large	intestine
27	chr3:179480200-179492200	Weak transcription	Fetal Intestine Small	intestine
28	chr3:179483200-179489200	Weak transcription	Stomach Mucosa	stomach
29	chr3:179484200-179493200	Weak transcription	Pancreas	Pancrea
30	chr3:179484600-179493200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:179484600-179500000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:179484800-179488000	Weak transcription	Fetal Thymus	thymus
35	chr3:179484800-179488800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:179484800-179490200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:179484800-179491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:179484800-179492000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:179484800-179492400	Weak transcription	Placenta	Placenta
40	chr3:179484800-179497800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:179485000-179488600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:179485000-179488800	Weak transcription	Aorta	Aorta
43	chr3:179485000-179490200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:179485000-179492000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:179485000-179495600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:179485000-179497200	Weak transcription	Fetal Brain Male	brain
47	chr3:179485000-179497800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:179485000-179498000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:179485000-179502000	Weak transcription	Colon Smooth Muscle	Colon
50	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood

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