Variant report

Variant	rs6784292
Chromosome Location	chr3:179481435-179481436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13323280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34021703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791474	1.00[EUR][1000 genomes]
rs6791555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73885933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621675	0.97[AFR][1000 genomes]
rs9290682	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9811751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9828199	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832389	1.00[EUR][1000 genomes]
rs9845333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847180	1.00[EUR][1000 genomes]
rs9850496	1.00[EUR][1000 genomes]
rs9866853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:179437400-179490200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:179438400-179489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:179441000-179484200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:179450000-179484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:179450000-179487200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:179450400-179483200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:179450400-179491800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:179452800-179483000	Weak transcription	A549	lung
13	chr3:179453200-179507600	Weak transcription	NHEK	skin
14	chr3:179458200-179483200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:179458400-179483200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:179461000-179483000	Weak transcription	Brain Angular Gyrus	brain
17	chr3:179461000-179487400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:179461000-179487800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:179462000-179484200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:179463000-179481800	Weak transcription	Aorta	Aorta
21	chr3:179463000-179491800	Weak transcription	Spleen	Spleen
22	chr3:179463000-179492200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:179463400-179483000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:179463600-179492200	Weak transcription	Right Atrium	heart
25	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:179469000-179489000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:179469800-179486600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:179469800-179486600	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:179470200-179486400	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:179472600-179486600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
32	chr3:179473000-179484200	Weak transcription	Fetal Brain Male	brain
33	chr3:179473200-179481800	Weak transcription	Fetal Heart	heart
34	chr3:179474200-179484200	Weak transcription	NHLF	lung
35	chr3:179474400-179484000	Weak transcription	Placenta	Placenta
36	chr3:179474600-179486400	Strong transcription	HepG2	liver
37	chr3:179474800-179485200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:179475000-179483000	Weak transcription	HSMMtube	muscle
39	chr3:179475200-179483000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:179475200-179483600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
42	chr3:179475400-179482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:179475800-179484200	Weak transcription	Brain Germinal Matrix	brain
44	chr3:179476200-179483000	Weak transcription	Right Ventricle	heart
45	chr3:179476200-179484200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr3:179476200-179512200	Weak transcription	Gastric	stomach
47	chr3:179476400-179481800	Weak transcription	Fetal Thymus	thymus
48	chr3:179476400-179482200	Weak transcription	Brain Hippocampus Middle	brain
49	chr3:179476600-179482000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:179477800-179485200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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