Variant report

Variant	rs6777944
Chromosome Location	chr3:179483026-179483027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179482195..179483792-chr3:179484313..179487111,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13323280	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830710	1.00[TSI][hapmap]
rs16830809	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34021703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791474	1.00[EUR][1000 genomes]
rs6791555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791717	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73885933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621675	0.94[AFR][1000 genomes]
rs9290682	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9811751	0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9828199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832389	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9845333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9847180	1.00[EUR][1000 genomes]
rs9850496	1.00[EUR][1000 genomes]
rs9866853	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872192	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:179437400-179490200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:179438400-179489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:179441000-179484200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:179450000-179484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:179450000-179487200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:179450400-179483200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:179450400-179491800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:179453200-179507600	Weak transcription	NHEK	skin
13	chr3:179458200-179483200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:179458400-179483200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:179461000-179487400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:179461000-179487800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:179462000-179484200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:179463000-179491800	Weak transcription	Spleen	Spleen
19	chr3:179463000-179492200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:179463600-179492200	Weak transcription	Right Atrium	heart
21	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:179469000-179489000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:179469800-179486600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:179469800-179486600	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:179470200-179486400	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:179472600-179486600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
28	chr3:179473000-179484200	Weak transcription	Fetal Brain Male	brain
29	chr3:179474200-179484200	Weak transcription	NHLF	lung
30	chr3:179474400-179484000	Weak transcription	Placenta	Placenta
31	chr3:179474600-179486400	Strong transcription	HepG2	liver
32	chr3:179474800-179485200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:179475200-179483600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
35	chr3:179475800-179484200	Weak transcription	Brain Germinal Matrix	brain
36	chr3:179476200-179484200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr3:179476200-179512200	Weak transcription	Gastric	stomach
38	chr3:179477800-179485200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr3:179478400-179486000	Strong transcription	Dnd41	blood
40	chr3:179478600-179486000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr3:179479000-179484400	Weak transcription	NH-A	brain
42	chr3:179479000-179493400	Weak transcription	Esophagus	oesophagus
43	chr3:179479000-179502600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
45	chr3:179479200-179483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:179479200-179483200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:179479200-179483200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr3:179479200-179483200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:179479200-179483200	Weak transcription	Lung	lung
50	chr3:179479200-179483400	Weak transcription	Brain Anterior Caudate	brain

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