Variant report

Variant	rs13332822
Chromosome Location	chr16:47718354-47718355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs13329876	1.00[AFR][1000 genomes]
rs13331276	1.00[AFR][1000 genomes]
rs13332687	1.00[AFR][1000 genomes]
rs13334553	1.00[AFR][1000 genomes]
rs13334954	1.00[AFR][1000 genomes]
rs13335589	1.00[AFR][1000 genomes]
rs13336440	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13336864	1.00[AFR][1000 genomes]
rs13337909	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13338192	1.00[AFR][1000 genomes]
rs13339329	1.00[AFR][1000 genomes]
rs28404995	1.00[AFR][1000 genomes]
rs28405972	1.00[AFR][1000 genomes]
rs28430442	1.00[AFR][1000 genomes]
rs28441575	1.00[AFR][1000 genomes]
rs28446873	1.00[AFR][1000 genomes]
rs28474983	1.00[AFR][1000 genomes]
rs28533453	1.00[AFR][1000 genomes]
rs28663455	1.00[AFR][1000 genomes]
rs28674891	1.00[AFR][1000 genomes]
rs28691569	1.00[AFR][1000 genomes]
rs28709022	1.00[AFR][1000 genomes]
rs28768157	1.00[AFR][1000 genomes]
rs28811125	1.00[AFR][1000 genomes]
rs34514482	1.00[AFR][1000 genomes]
rs9921060	1.00[AFR][1000 genomes]
rs9921690	1.00[AFR][1000 genomes]
rs9922236	1.00[AFR][1000 genomes]
rs9922531	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9922863	1.00[AFR][1000 genomes]
rs9922954	1.00[AFR][1000 genomes]
rs9924052	1.00[AFR][1000 genomes]
rs9924144	1.00[AFR][1000 genomes]
rs9924420	1.00[AFR][1000 genomes]
rs9925039	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9925483	1.00[AFR][1000 genomes]
rs9925499	1.00[AFR][1000 genomes]
rs9928023	1.00[AFR][1000 genomes]
rs9928782	1.00[AFR][1000 genomes]
rs9930919	1.00[AFR][1000 genomes]
rs9931999	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9932380	0.87[AFR][1000 genomes]
rs9934103	1.00[AFR][1000 genomes]
rs9934849	1.00[AFR][1000 genomes]
rs9935072	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9935386	1.00[AFR][1000 genomes]
rs9935939	1.00[AFR][1000 genomes]
rs9936017	1.00[AFR][1000 genomes]
rs9936168	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9936755	1.00[AFR][1000 genomes]
rs9937013	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9938457	1.00[AFR][1000 genomes]
rs9938504	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9940019	1.00[AFR][1000 genomes]
rs9940111	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1056126	chr16:47658705-47738655	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47626600-47724600	Weak transcription	Small Intestine	intestine
2	chr16:47666200-47729800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:47678200-47735000	Weak transcription	Fetal Brain Male	brain
4	chr16:47678400-47722800	Weak transcription	NHDF-Ad	bronchial
5	chr16:47678400-47730800	Weak transcription	NH-A	brain
6	chr16:47678600-47733200	Weak transcription	NHLF	lung
7	chr16:47685600-47730600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:47688200-47727000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr16:47688200-47727200	Weak transcription	Hela-S3	cervix
10	chr16:47695800-47727200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr16:47695800-47735000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:47696000-47727800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:47696000-47730200	Weak transcription	NHEK	skin
14	chr16:47696000-47737800	Weak transcription	HMEC	breast
15	chr16:47696400-47723000	Weak transcription	Brain Anterior Caudate	brain
16	chr16:47696400-47723200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr16:47699000-47728600	Weak transcription	HUVEC	blood vessel
18	chr16:47699400-47735000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr16:47700800-47731400	Weak transcription	Stomach Mucosa	stomach
20	chr16:47702400-47723400	Weak transcription	A549	lung
21	chr16:47710000-47721800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:47711200-47722400	Weak transcription	HepG2	liver
23	chr16:47711400-47718800	Weak transcription	Fetal Kidney	kidney
24	chr16:47711400-47720800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr16:47711400-47721600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr16:47711400-47722400	Weak transcription	K562	blood
27	chr16:47711400-47722800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:47711400-47722800	Weak transcription	Brain Hippocampus Middle	brain
29	chr16:47711400-47722800	Weak transcription	HSMM	muscle
30	chr16:47711400-47725200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr16:47711400-47730200	Weak transcription	Brain Angular Gyrus	brain
32	chr16:47711600-47721200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr16:47711600-47721200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:47711600-47721600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:47711600-47721600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr16:47711600-47721600	Weak transcription	Left Ventricle	heart
37	chr16:47711600-47721600	Weak transcription	Right Ventricle	heart
38	chr16:47711600-47721600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr16:47711600-47721800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr16:47711600-47722000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr16:47711600-47722000	Weak transcription	Primary T cells from cord blood	blood
42	chr16:47711600-47722000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr16:47711600-47722400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr16:47711600-47722600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr16:47711600-47722600	Weak transcription	Dnd41	blood
46	chr16:47711600-47722800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr16:47711600-47722800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr16:47711600-47722800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr16:47711600-47722800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr16:47711600-47722800	Weak transcription	Duodenum Mucosa	Duodenum

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