Variant report

Variant	rs9935072
Chromosome Location	chr16:47733503-47733504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47727162..47730087-chr16:47731751..47735128,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13329876	1.00[AFR][1000 genomes]
rs13331276	1.00[AFR][1000 genomes]
rs13332687	1.00[AFR][1000 genomes]
rs13332822	1.00[AFR][1000 genomes]
rs13334954	1.00[AFR][1000 genomes]
rs13335589	1.00[AFR][1000 genomes]
rs13336440	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13336864	1.00[AFR][1000 genomes]
rs13337909	1.00[AFR][1000 genomes]
rs13338192	1.00[AFR][1000 genomes]
rs13339329	1.00[AFR][1000 genomes]
rs28404995	1.00[AFR][1000 genomes]
rs28405972	1.00[AFR][1000 genomes]
rs28430442	1.00[AFR][1000 genomes]
rs28441575	1.00[AFR][1000 genomes]
rs28446873	1.00[AFR][1000 genomes]
rs28474983	1.00[AFR][1000 genomes]
rs28533453	1.00[AFR][1000 genomes]
rs28663455	1.00[AFR][1000 genomes]
rs28674891	1.00[AFR][1000 genomes]
rs28691569	1.00[AFR][1000 genomes]
rs28709022	1.00[AFR][1000 genomes]
rs28768157	1.00[AFR][1000 genomes]
rs28811125	1.00[AFR][1000 genomes]
rs34514482	1.00[AFR][1000 genomes]
rs9921060	1.00[AFR][1000 genomes]
rs9921690	1.00[AFR][1000 genomes]
rs9922236	1.00[AFR][1000 genomes]
rs9922531	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9922863	1.00[AFR][1000 genomes]
rs9922954	1.00[AFR][1000 genomes]
rs9924052	1.00[AFR][1000 genomes]
rs9924144	1.00[AFR][1000 genomes]
rs9924420	1.00[AFR][1000 genomes]
rs9925039	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9925499	1.00[AFR][1000 genomes]
rs9928023	1.00[AFR][1000 genomes]
rs9928782	1.00[AFR][1000 genomes]
rs9930919	1.00[AFR][1000 genomes]
rs9931999	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9932380	0.87[AFR][1000 genomes]
rs9934103	1.00[AFR][1000 genomes]
rs9934849	1.00[AFR][1000 genomes]
rs9935386	1.00[AFR][1000 genomes]
rs9935939	1.00[AFR][1000 genomes]
rs9936017	1.00[AFR][1000 genomes]
rs9936168	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9936755	1.00[AFR][1000 genomes]
rs9937013	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9938457	1.00[AFR][1000 genomes]
rs9938504	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9940111	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1056126	chr16:47658705-47738655	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47678200-47735000	Weak transcription	Fetal Brain Male	brain
2	chr16:47695800-47735000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:47696000-47737800	Weak transcription	HMEC	breast
4	chr16:47699400-47735000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr16:47711600-47736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:47717800-47746600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:47718600-47734600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:47720400-47735000	Strong transcription	Primary B cells from cord blood	blood
9	chr16:47721200-47736000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr16:47721600-47733600	Strong transcription	Liver	Liver
11	chr16:47721600-47733800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr16:47721600-47733800	Strong transcription	Adipose Nuclei	Adipose
13	chr16:47721600-47733800	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr16:47721600-47734000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr16:47721800-47733600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr16:47722000-47733800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr16:47722200-47733600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:47722400-47733600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr16:47722400-47733600	Strong transcription	HepG2	liver
20	chr16:47722600-47733800	Strong transcription	Dnd41	blood
21	chr16:47722800-47733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr16:47722800-47733600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:47722800-47733600	Strong transcription	Primary T cells from cord blood	blood
24	chr16:47722800-47733600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr16:47722800-47733600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr16:47722800-47733800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:47722800-47733800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:47723400-47735600	Strong transcription	Primary hematopoietic stem cells	blood
29	chr16:47724800-47733600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr16:47724800-47739200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:47726600-47733600	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr16:47727000-47733600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr16:47727000-47733600	Strong transcription	Fetal Intestine Large	intestine
34	chr16:47727000-47733800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr16:47727200-47733600	Strong transcription	Fetal Muscle Leg	muscle
36	chr16:47727200-47733600	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr16:47727200-47733600	Strong transcription	A549	lung
38	chr16:47727200-47733800	Strong transcription	Fetal Kidney	kidney
39	chr16:47727400-47736600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr16:47727600-47733600	Strong transcription	K562	blood
41	chr16:47727600-47738600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr16:47727600-47746800	Weak transcription	HSMM	muscle
43	chr16:47727800-47733600	Strong transcription	Brain Cingulate Gyrus	brain
44	chr16:47729000-47737200	Weak transcription	NHDF-Ad	bronchial
45	chr16:47729600-47735000	Weak transcription	Small Intestine	intestine
46	chr16:47729600-47744200	Weak transcription	Gastric	stomach
47	chr16:47729800-47734800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:47730000-47733800	Weak transcription	Fetal Heart	heart
49	chr16:47730200-47733600	Strong transcription	Brain Hippocampus Middle	brain
50	chr16:47730200-47733600	Strong transcription	NHEK	skin

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