Variant report

Variant	rs28768157
Chromosome Location	chr16:47452286-47452287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12102280	1.00[AFR][1000 genomes]
rs12103136	1.00[AFR][1000 genomes]
rs13329876	1.00[AFR][1000 genomes]
rs13331194	1.00[AFR][1000 genomes]
rs13331276	1.00[AFR][1000 genomes]
rs13332687	1.00[AFR][1000 genomes]
rs13332822	1.00[AFR][1000 genomes]
rs13334553	1.00[AFR][1000 genomes]
rs13334954	1.00[AFR][1000 genomes]
rs13335589	1.00[AFR][1000 genomes]
rs13336440	1.00[AFR][1000 genomes]
rs13336864	1.00[AFR][1000 genomes]
rs13337909	1.00[AFR][1000 genomes]
rs13338192	1.00[AFR][1000 genomes]
rs13339329	1.00[AFR][1000 genomes]
rs28404995	1.00[AFR][1000 genomes]
rs28405972	1.00[AFR][1000 genomes]
rs28430442	1.00[AFR][1000 genomes]
rs28432840	1.00[AFR][1000 genomes]
rs28441575	1.00[AFR][1000 genomes]
rs28446873	1.00[AFR][1000 genomes]
rs28474983	1.00[AFR][1000 genomes]
rs28533453	1.00[AFR][1000 genomes]
rs28663455	1.00[AFR][1000 genomes]
rs28674891	1.00[AFR][1000 genomes]
rs28691569	1.00[AFR][1000 genomes]
rs28709022	1.00[AFR][1000 genomes]
rs28811125	1.00[AFR][1000 genomes]
rs28868367	0.87[AFR][1000 genomes]
rs34514482	1.00[AFR][1000 genomes]
rs9921060	1.00[AFR][1000 genomes]
rs9921607	0.87[AFR][1000 genomes]
rs9921690	1.00[AFR][1000 genomes]
rs9922236	1.00[AFR][1000 genomes]
rs9922531	1.00[AFR][1000 genomes]
rs9922863	1.00[AFR][1000 genomes]
rs9922954	1.00[AFR][1000 genomes]
rs9924052	1.00[AFR][1000 genomes]
rs9924144	1.00[AFR][1000 genomes]
rs9924420	1.00[AFR][1000 genomes]
rs9925039	1.00[AFR][1000 genomes]
rs9925483	1.00[AFR][1000 genomes]
rs9925499	1.00[AFR][1000 genomes]
rs9928023	1.00[AFR][1000 genomes]
rs9928782	1.00[AFR][1000 genomes]
rs9930629	1.00[AFR][1000 genomes]
rs9930919	1.00[AFR][1000 genomes]
rs9931999	1.00[AFR][1000 genomes]
rs9932380	0.87[AFR][1000 genomes]
rs9932666	1.00[AFR][1000 genomes]
rs9933580	0.87[AFR][1000 genomes]
rs9934103	1.00[AFR][1000 genomes]
rs9934849	1.00[AFR][1000 genomes]
rs9935072	1.00[AFR][1000 genomes]
rs9935386	1.00[AFR][1000 genomes]
rs9935939	1.00[AFR][1000 genomes]
rs9936017	1.00[AFR][1000 genomes]
rs9936168	1.00[AFR][1000 genomes]
rs9936755	1.00[AFR][1000 genomes]
rs9937013	1.00[AFR][1000 genomes]
rs9938457	1.00[AFR][1000 genomes]
rs9938504	1.00[AFR][1000 genomes]
rs9939423	1.00[AFR][1000 genomes]
rs9940019	1.00[AFR][1000 genomes]
rs9940111	1.00[AFR][1000 genomes]
rs9940262	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1060396	chr16:47264261-47469345	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428656	chr16:47316866-47469918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
15	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv960006	chr16:47435751-47460534	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47393000-47458200	Weak transcription	Pancreas	Pancrea
2	chr16:47393000-47459000	Weak transcription	NHDF-Ad	bronchial
3	chr16:47397800-47458800	Weak transcription	Colonic Mucosa	Colon
4	chr16:47404400-47458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:47404800-47458600	Weak transcription	Aorta	Aorta
6	chr16:47405600-47458200	Weak transcription	Brain Anterior Caudate	brain
7	chr16:47405800-47454000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:47409600-47458600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr16:47409600-47458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:47409800-47454000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr16:47409800-47454000	Weak transcription	HSMM	muscle
12	chr16:47410000-47458400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:47424600-47458400	Weak transcription	Brain Angular Gyrus	brain
14	chr16:47426400-47458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:47426400-47482800	Weak transcription	NH-A	brain
16	chr16:47426600-47454200	Weak transcription	GM12878-XiMat	blood
17	chr16:47426600-47458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr16:47426600-47459000	Weak transcription	Osteobl	bone
19	chr16:47427200-47458600	Weak transcription	Gastric	stomach
20	chr16:47428600-47458200	Weak transcription	Brain Substantia Nigra	brain
21	chr16:47428600-47458600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr16:47430200-47458800	Weak transcription	Right Ventricle	heart
23	chr16:47430400-47485600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr16:47430600-47458200	Weak transcription	Fetal Muscle Leg	muscle
25	chr16:47430600-47458600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:47430600-47458600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr16:47430800-47454200	Weak transcription	Placenta	Placenta
28	chr16:47431000-47458200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr16:47431400-47454200	Weak transcription	Adipose Nuclei	Adipose
30	chr16:47431400-47458600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:47431600-47478200	Weak transcription	K562	blood
32	chr16:47431800-47458600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr16:47431800-47470000	Weak transcription	Psoas Muscle	Psoas
34	chr16:47433000-47458800	Weak transcription	Brain Hippocampus Middle	brain
35	chr16:47433000-47459000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:47434400-47458200	Weak transcription	Left Ventricle	heart
37	chr16:47434600-47458400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr16:47437000-47458800	Weak transcription	HSMMtube	muscle
39	chr16:47437200-47458200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr16:47441600-47458600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr16:47442600-47458600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr16:47442600-47458800	Weak transcription	Primary B cells from cord blood	blood
43	chr16:47442600-47483800	Weak transcription	Hela-S3	cervix
44	chr16:47442800-47458800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr16:47443800-47459200	Weak transcription	Fetal Brain Female	brain
46	chr16:47444600-47458600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr16:47444800-47458000	Weak transcription	Brain Germinal Matrix	brain
48	chr16:47445200-47458600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr16:47445200-47458600	Weak transcription	Thymus	Thymus
50	chr16:47445200-47458800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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