Variant report
| Variant | rs1333447 |
|---|---|
| Chromosome Location | chr13:39718932-39718933 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:39718311..39720727-chr13:39720966..39723324,2 | K562 | blood: | |
| 2 | chr13:39718832..39719761-chr13:39837531..39838084,2 | MCF-7 | breast: | |
| 3 | chr13:39718635..39719664-chr13:40190328..40190925,3 | MCF-7 | breast: | |
| 4 | chr13:39718578..39719659-chr13:39836349..39837386,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1333432 | 0.91[AFR][1000 genomes] |
| rs1413051 | 0.91[AFR][1000 genomes] |
| rs1536345 | 0.91[AFR][1000 genomes] |
| rs1819281 | 0.91[AFR][1000 genomes] |
| rs1855267 | 0.91[AFR][1000 genomes] |
| rs1926473 | 0.91[AFR][1000 genomes] |
| rs2148420 | 0.91[AFR][1000 genomes] |
| rs2148422 | 0.91[AFR][1000 genomes] |
| rs2184134 | 0.91[AFR][1000 genomes] |
| rs2324161 | 0.91[AFR][1000 genomes] |
| rs4943636 | 0.91[AFR][1000 genomes] |
| rs4943637 | 0.91[AFR][1000 genomes] |
| rs4943638 | 0.91[AFR][1000 genomes] |
| rs7330521 | 0.91[AFR][1000 genomes] |
| rs7982413 | 0.91[AFR][1000 genomes] |
| rs9285127 | 0.91[AFR][1000 genomes] |
| rs943226 | 0.91[AFR][1000 genomes] |
| rs943228 | 0.91[AFR][1000 genomes] |
| rs943232 | 0.91[AFR][1000 genomes] |
| rs9548611 | 0.91[AFR][1000 genomes] |
| rs9548617 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39714600-39719000 | Weak transcription | Brain Angular Gyrus | brain |
